LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g2551	ATGGAGCTTCCAAATCAAATAATAGGAGGAGGTCAAGAAGGGTCTTCTTCAACTCAAAAGAAAATGGGAAGAGGAAAGATTGAAATAAAAAGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAACGCCGCAACGGTTTGCTCAAGAAAGCTTATGAATTGTCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACCATTGAAAGGTATAAGAAGGCATGTGCTGCTTCCTCAAACTCGGAATCTGTATCGGAAACTAATACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGCTCTCTGAGTCTCAAGGAACTAAAGAACCTTGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAGCACTGTTTGCTGATGTCGAGTTCATGCAAAAGAGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCAGAACATGAGAGAGCTCAACAACAGCAACAGCAACAGCAATCAAATATGATGTCAGGTGGAACACTGTGCGAGTCCATTCCTAATTCACAATCATATGACAGCAGGAACTTTTTTCCTGTTAATCTCTTAGCTGCTTCTGATGATCAACAATATTCTCGTCAAGACCACACTGCTCTCCAACTTGTGGCAGCAGCCGTCTCCACACCCCGACTTGAATACAGAACCAATGACTTTGCCATTAAGATCTAG	828	0.4263	MELPNQIIGGGQEGSSSTQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASSNSESVSETNTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHEALFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQQQSNMMSGGTLCESIPNSQSYDSRNFFPVNLLAASDDQQYSRQDHTALQLVAAAVSTPRLEYRTNDFAIKI	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g2551	275	Coils	Coil	181	208	-	-
	Aed4g2551	275	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	15	243	-	-
	Aed4g2551	275	MobiDBLite	consensus disorder prediction	197	218	-	-
	Aed4g2551	275	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	31	78	IPR002100	GO:0003677\|GO:0046983
	Aed4g2551	275	SUPERFAMILY	SRF-like	23	98	IPR036879	GO:0003677\|GO:0046983
	Aed4g2551	275	PRINTS	MADS domain signature	24	44	IPR002100	GO:0003677\|GO:0046983
	Aed4g2551	275	PRINTS	MADS domain signature	44	59	IPR002100	GO:0003677\|GO:0046983
	Aed4g2551	275	PRINTS	MADS domain signature	59	80	IPR002100	GO:0003677\|GO:0046983
	Aed4g2551	275	ProSiteProfiles	MADS-box domain profile.	22	82	IPR002100	GO:0003677\|GO:0046983
	Aed4g2551	275	Pfam	K-box region	105	192	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aed4g2551	275	Gene3D	-	34	102	IPR036879	GO:0003677\|GO:0046983
	Aed4g2551	275	PANTHER	MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN	15	243	-	-
	Aed4g2551	275	ProSiteProfiles	K-box domain profile.	108	198	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aed4g2551	275	Coils	Coil	111	131	-	-
	Aed4g2551	275	SMART	madsneu2	22	81	IPR002100	GO:0003677\|GO:0046983
	Aed4g2551	275	CDD	MADS_MEF2_like	23	99	IPR033896	GO:0000977\|GO:0045944
	Aed4g2551	275	ProSitePatterns	MADS-box domain signature.	24	78	IPR002100	GO:0003677\|GO:0046983
	Aed4g2551	275	MobiDBLite	consensus disorder prediction	1	27	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g2551	Aed-Chr4	27468184	27479734	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g2551	8	255	MADS-box Gene Family	AT3G58780	69.531	1.11e-118	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aed4g2551		K-box	3.1e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g2551	K09264		-	gmx:100808734	410.994

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed4g2551	4	27468184	27479734	Aed3g2460	3	27235497	27239361	PCT