Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2526 ATGAAATCAAAACTGGATTTCAGGATGTTCCACTGTCGAGAGGTACCCGACCCGATCAAATGCATAAAGCCCACTGGGCCAAAAATGTTGCAAAATAGTTATTCAACCCGACCCGGCCCATTTCTTCTACTATGTATCGTTGAAATTTCAGCAACAACTAGAAAAAGAAAAACCCTTCTAAAAACCTGCGGCAAAGAGAACCAGCAACCAACAATGACGCCGAGCTTCGTCTTCGACCCTCCCAGCGACGAAGAAATCGAACACTCCGAAAGAGAAGAAGAAGAAGAAGAAGAAGAATCAGAATCAGAATCAGAAGAAGCTGATTCAGGATCAGGATCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGAACAAAAAAGCGCGGGTTGCGAAGAAGAAAACACAGTCTCCATGGGACTTCACTAAATTCTCGGAATCAGTGGCCGAGGAACACGCTCGCAGGAGCACAACCTCGGTCGACGAGAAAATCTCCAAAGCACTCAGACAACGTTCCACGCCGCTCGTTGCTGAGCTCGACCTCAGCTCCGAGTCCGAACCTGAAGATGAACAAGAAGATTATAGACCAGAGGAAGAAGATGAAGAAGAGGGTAATGATGGTGATAACAAATCCTTTTTTGCTCCTTCTGATGGAACCTCTTTCCATGCTGATTCGTTCTTGCAGCTCAATTTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATTCTAAACCAACGCCAATTCAGGCAGCTTGTATTCCATTAGCGTTGAGTGGTCGTGATATATGTGGAAGTGCCATTACTGGTTCAGGGAAGACAGCTGCATTTACACTACCTACTTTAGAGAGGTTGCTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTACACAGTATGGTAGAAAAGCTTGCTCAGTTTACCGATATAAGGTGTTGCCTAGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCTTTGAGAACAGTGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATACTATGTCTGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTCTGGAGCTTGGATTTACTGCTGAAATTCAAGAACTTGTTCGTTTGTGTCCCAAAAAGAGGCAGACTATGCTCTTTTCCGCAACTATGTCTGAGGATGTGGACGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCAGCAACCTTGACTGAGGAGGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTGCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCTCATAGGTTGAAAGTTATATTTGGGTTATCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAGTTTAGGAAGCAGCAAGTTGATTTTTTGATTGCAACAGATGTGGCTGCCCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTAATAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGAAGGGTATGCTGTTACTTTTGTGACTGACACTGATCGATCACTTTTAAAAGCCATTGCCAAGAGGGCTGGTTCAAAACTGAGAAGCCGCATTGTTGCTGAGCAATCAATACTTAAATGGTCTCATATAATTGAGCAAATGGAGGATCAAATTGCTGAAGTATTTCAAGACGAGAGAGAAGAAATGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGTCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGAAAAAGCATCAAAGGCATCTGTGGATACGAACAAGAGTTCTGGAAAAGAGGTAATTAGTGCTGAGCAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAAAATTTGCCTAGAAAACAGCGTAGAAAATTGGAAGCGGCTAGAGAGATGTTGGAGGATGAGAAGGAGGATGGCAAACATGTAGAGGCTAAGAGGGGAGATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCATACCGGCGGGCAAAAGCAGTGAAGGCTGTCAACAAGGCTTTGGATTCTGGCAAGATTGTGCAGAAGAGTCAAAAGAAATCTAATAATCCTTCCCGAAAAAACCCTTCAAGAACAGAAGAGATGCGAGACCTATTCCAGACTGACATGAAGGATAAAAAGCCGAAAAGAAAAGGTGCTGGAGGTGGAAAGAAGAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2487 0.4439 MKSKLDFRMFHCREVPDPIKCIKPTGPKMLQNSYSTRPGPFLLLCIVEISATTRKRKTLLKTCGKENQQPTMTPSFVFDPPSDEEIEHSEREEEEEEEESESESEEADSGSGSEEEEEEEEEGNKKARVAKKKTQSPWDFTKFSESVAEEHARRSTTSVDEKISKALRQRSTPLVAELDLSSESEPEDEQEDYRPEEEDEEEGNDGDNKSFFAPSDGTSFHADSFLQLNLSRPLLRACEALGYSKPTPIQAACIPLALSGRDICGSAITGSGKTAAFTLPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMVEKLAQFTDIRCCLVVGGLSTKVQEAALRTVPDIVVATPGRMIDHLRNTMSVDLDDLAVLILDEADRLLELGFTAEIQELVRLCPKKRQTMLFSATMSEDVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTAKVIIFSGTKQAAHRLKVIFGLSGLKAAELHGNLTQAQRLEALEQFRKQQVDFLIATDVAARGLDIIGVQTVINFACPRDLNSYVHRVGRTARAGREGYAVTFVTDTDRSLLKAIAKRAGSKLRSRIVAEQSILKWSHIIEQMEDQIAEVFQDEREEMILRKAEMEATKAENMIAHREEIFSRPKRTWFVTEKEKKLAEKASKASVDTNKSSGKEVISAEQAEDLKMKEKRKREREKNLPRKQRRKLEAAREMLEDEKEDGKHVEAKRGDKKEKGGMSLVDLAYRRAKAVKAVNKALDSGKIVQKSQKKSNNPSRKNPSRTEEMRDLFQTDMKDKKPKRKGAGGGKKKSSFKSKSRYKRK 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2526 828 MobiDBLite consensus disorder prediction 783 806 - -
Aed4g2526 828 PANTHER RNA HELICASE 379 809 - -
Aed4g2526 828 Pfam Helicase conserved C-terminal domain 460 563 IPR001650 -
Aed4g2526 828 Gene3D - 183 430 IPR027417 -
Aed4g2526 828 Gene3D - 434 604 IPR027417 -
Aed4g2526 828 MobiDBLite consensus disorder prediction 667 747 - -
Aed4g2526 828 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 223 251 IPR014014 GO:0003724
Aed4g2526 828 MobiDBLite consensus disorder prediction 763 828 - -
Aed4g2526 828 Pfam DEAD/DEAH box helicase 247 417 IPR011545 GO:0003676|GO:0005524
Aed4g2526 828 Coils Coil 712 735 - -
Aed4g2526 828 Coils Coil 687 707 - -
Aed4g2526 828 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 439 602 IPR001650 -
Aed4g2526 828 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 254 428 IPR014001 -
Aed4g2526 828 Coils Coil 86 106 - -
Aed4g2526 828 MobiDBLite consensus disorder prediction 181 205 - -
Aed4g2526 828 SMART ultradead3 242 443 IPR014001 -
Aed4g2526 828 MobiDBLite consensus disorder prediction 144 167 - -
Aed4g2526 828 Coils Coil 616 636 - -
Aed4g2526 828 MobiDBLite consensus disorder prediction 61 132 - -
Aed4g2526 828 MobiDBLite consensus disorder prediction 144 214 - -
Aed4g2526 828 CDD SF2_C_DEAD 440 572 - -
Aed4g2526 828 PANTHER RNA HELICASE 128 354 - -
Aed4g2526 828 MobiDBLite consensus disorder prediction 807 828 - -
Aed4g2526 828 MobiDBLite consensus disorder prediction 768 782 - -
Aed4g2526 828 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 374 382 IPR000629 -
Aed4g2526 828 PANTHER BNAA01G17110D PROTEIN 128 354 - -
Aed4g2526 828 PANTHER BNAA01G17110D PROTEIN 379 809 - -
Aed4g2526 828 MobiDBLite consensus disorder prediction 86 121 - -
Aed4g2526 828 CDD DEADc_DDX27 234 429 - -
Aed4g2526 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 583 IPR027417 -
Aed4g2526 828 MobiDBLite consensus disorder prediction 685 747 - -
Aed4g2526 828 SMART helicmild6 478 563 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2526 Aed-Chr4 27194682 27203020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2526 177 580 Eukaryotic Initiation Factors Gene Family AT3G13920 32.924 2.27e-52 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2526 K13181 - gmx:100776684 1130.93