Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2486 ATGACCAAGTGGTATTCTGGGATAATGGAAGCAACAACAAGGTGTAAGCAAGTTTTTTCTATGAGGATTTTGGCTGGCAGTGGCGGTTATGCATTTGATCTTTTCATAAAAGTTGCTTTTGCTGAACTTACTTGCATTCTGGCACTAGCTTGCAAAGGAGCTGTCACAGGGGCCATTGCAGCACTAGAATTGCTAAATATTGCTGCATATGATGAGCCATTGTCTAAGCTATTTATGGAATGGATATGTCCAGCTGTTGCACAAGCCTATCAATGTCATATCAGTGCACATGCAACAACTTACAGAGAAGAATCAGATATTTACAATGACAACAACACTGTCAGGGGAATCACACTAAAAGGGATGGCTTGGAATGTCATTCAAAAGCTTCCTGATTTTGAGGATGAAGAATTTGTTAGGACACTCCCAAAATGTAGCCACTTTTTTCACTTGGGCTGCATAGATAAATGGCTAGTCCAACAAGGATCATGCCCCGTGTGTAGAATTTATGTTCCAAATTTATGA 525 0.4019 MTKWYSGIMEATTRCKQVFSMRILAGSGGYAFDLFIKVAFAELTCILALACKGAVTGAIAALELLNIAAYDEPLSKLFMEWICPAVAQAYQCHISAHATTYREESDIYNDNNTVRGITLKGMAWNVIQKLPDFEDEEFVRTLPKCSHFFHLGCIDKWLVQQGSCPVCRIYVPNL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2486 174 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 130 171 - -
Aed4g2486 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 171 IPR013083 -
Aed4g2486 174 SUPERFAMILY RING/U-box 132 172 - -
Aed4g2486 174 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 130 171 IPR044523 -
Aed4g2486 174 Pfam RING-H2 zinc finger domain 138 168 IPR024766 GO:0008270
Aed4g2486 174 ProSiteProfiles Zinc finger RING-type profile. 145 168 IPR001841 -
Aed4g2486 174 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 50 133 - -
Aed4g2486 174 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 50 133 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2486 Aed-Chr4 26924541 26926612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2486 76 171 C3H Transcription Factor Family AT5G66070 36.607 4.67e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2486 - K19041 gmx:100799697 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2486 4 26924541 26926612 Aed4g2486 4 26924541 26926612 ECH