Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2485 ATGGGTTGTTGTGCAAGTAAAGATTCAGAGCCACAACACAATGGTTACAGACATGCTGGGACCGGTGGTGTGCACAACCAGAAGACTCATGAACCTTTGGTCAACCAATCAAGAACACCTGCAAATCAACCTTATCATTTACCTGAAAAGCATGCTGCATCCACTGCTCAGACAGTGCCTCAGAATACGCCATGGAAGCCTTCTGGTCCTGCCCTTAGTCCTAAACCTATTGTTAGACAAGACACGAACACAATTCTTGGGAAGCAGTTTGAGGATGTGAAGCAGTTCTACACACTCGGGAAGGAATTGGGTAGAGGGCAATTTGGGGTGACATATCTTTGCACTGAGAATTCAACAGGGTTGCAGTATGCCTGCAAGTCCATTTCCAAGAGGAAACTTGCGAACAAATCTGATAAGGAGGACATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCCAACATTGTTGAGTTCAAAGGGGCTTATGAGGATAGGAACTCAGTTCATGTTGTGATGGAGCTGTGTGCAGGTGGAGAACTTTTTGATAGGATTATTGCCAAGGGGCATTACAGTGAGAGGGCAGCTGCTTCAATATGCAGACAAATTGTAAATGTTGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCTAGTAGAGATGAAAATGCACTTCTCAAGGCAACTGATTTTGGCTTGTCCGTTTTCATTGAAGAAGGAAAGGTATATCGGGATATAGTTGGTAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGACGCAAATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTCATATTGTATATCTTACTTAGTGGAGTCCCTCCATTTTGGGCTGAGACTGAGAAGGGAATATTTGATGCCATATTGGATGGTCACATTGATTTTGAAAGTCAACCATGGCCTAACATTTCAAACAACGCCAAGGATCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAGCGCATTACCTCTGCTCAAGTACTTGACCACCCATGGATTAAAGATGGAAATGCTTCAGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCTTGAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGATGGAAATGGCTCAATAGACTACATAGAGTTCATCACTGCTACAATGCATAGACACAAGTTAGAAAGAGATGACCAACTTTCCAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTATATTACAAGAGATGAATTGGAAACAGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATCAAGGAAATTATATCTGAAGTTGATACAATTATATCTGAAGTGGATACAGATCATGATGGTAGAATCAACTATGACGAATTCTCTGCAATGATGAAGAGTGGAAACCAACAACAAGGCAGGCTATTCTAA 1557 0.4155 MGCCASKDSEPQHNGYRHAGTGGVHNQKTHEPLVNQSRTPANQPYHLPEKHAASTAQTVPQNTPWKPSGPALSPKPIVRQDTNTILGKQFEDVKQFYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLANKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRNSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRKCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILDGHIDFESQPWPNISNNAKDLVRKMLIQDPKKRITSAQVLDHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSDGNGSIDYIEFITATMHRHKLERDDQLSKAFQYFDKDNSGYITRDELETAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYDEFSAMMKSGNQQQGRLF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2485 518 Gene3D - 395 413 - -
Aed4g2485 518 CDD STKc_CAMK 96 354 - -
Aed4g2485 518 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2485 518 Gene3D Transferase(Phosphotransferase) domain 1 183 373 - -
Aed4g2485 518 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
Aed4g2485 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 415 512 - -
Aed4g2485 518 Gene3D - 374 394 - -
Aed4g2485 518 CDD EFh 402 466 IPR002048 GO:0005509
Aed4g2485 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 57 414 - -
Aed4g2485 518 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Aed4g2485 518 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Aed4g2485 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Aed4g2485 518 MobiDBLite consensus disorder prediction 1 28 - -
Aed4g2485 518 Gene3D - 415 430 - -
Aed4g2485 518 SUPERFAMILY EF-hand 378 509 IPR011992 -
Aed4g2485 518 Pfam EF-hand domain pair 439 508 IPR002048 GO:0005509
Aed4g2485 518 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Aed4g2485 518 Gene3D - 431 507 - -
Aed4g2485 518 CDD EFh 440 508 IPR002048 GO:0005509
Aed4g2485 518 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Aed4g2485 518 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2485 518 MobiDBLite consensus disorder prediction 51 77 - -
Aed4g2485 518 SMART efh_1 482 510 IPR002048 GO:0005509
Aed4g2485 518 SMART efh_1 440 468 IPR002048 GO:0005509
Aed4g2485 518 SMART efh_1 401 432 IPR002048 GO:0005509
Aed4g2485 518 ProSiteProfiles EF-hand calcium-binding domain profile. 478 513 IPR002048 GO:0005509
Aed4g2485 518 SUPERFAMILY Protein kinase-like (PK-like) 96 375 IPR011009 -
Aed4g2485 518 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 415 512 - -
Aed4g2485 518 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 57 414 - -
Aed4g2485 518 MobiDBLite consensus disorder prediction 54 68 - -
Aed4g2485 518 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2485 Aed-Chr4 26907688 26915756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2485 1 518 EF-hand Containing Proteins AT3G20410 68.638 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aed4g2485 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2485 K13412 - gmx:100798651 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2499 3 27469838 27474180 Aed4g2485 4 26907688 26915756 ECH
Aed4g2485 4 26907688 26915756 Aed4g2485 4 26907688 26915756 ECH