Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2482 ATGCCCTCTGCCCAGGATCCATTTTACGTTGTCAAGGCCGAGATTCAAGATTCGATTGATAAGCTGCAATCTAGTTTTCACCAATGGGAAAGCAATTCCGGCACTGCAGAACAAGGACATGTTACAAAGGAGGTTCTTGCTGGATGTGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGAATTGATGAAGCTGAGATTGAAAGCCGAAGGAGATGGACAAGCAGCGCTCGTTCTCAGGTTGGCACAATGAAGAGAGCTGTGCAAGCTGGAAAGGGCTCAAGTACCACAAGCCATTCTAGTGTGAATGGGATGCGCCGAGAACTAATGAGGCTACCAGATTCTCATCAAACTCATAGCTCCAACCAGTATGCTGCCCGAGATAATGACGATTTTATACAATCAGAATCAGATAGACAATCGCTTCTTATGAAGAGTCAGGATGACGAATTGGATGAGCTCACTGAAAGTGTACGAAGAATTGGAGGTGTTGGACTTACAATACATGATGAACTCACTGCACAGAAAAAAGTGGGAATGGTTATGAAGAAGGCTAGTGCAAAGGGTCAGATCATGATGATATTGGGTTTGTTGGCCCTGTTCATCTTTCTCTTTATCTTAGTATTCTTCACCTAG 675 0.44 MPSAQDPFYVVKAEIQDSIDKLQSSFHQWESNSGTAEQGHVTKEVLAGCESIEWQVDELDKAIAVASRDPSWYGIDEAEIESRRRWTSSARSQVGTMKRAVQAGKGSSTTSHSSVNGMRRELMRLPDSHQTHSSNQYAARDNDDFIQSESDRQSLLMKSQDDELDELTESVRRIGGVGLTIHDELTAQKKVGMVMKKASAKGQIMMILGLLALFIFLFILVFFT 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2482 224 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Aed4g2482 224 PANTHER SYNTAXIN 188 223 IPR045242 -
Aed4g2482 224 PANTHER SYNTAXIN 1 191 IPR045242 -
Aed4g2482 224 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Aed4g2482 224 PANTHER SYNTAXIN PROTEIN 188 223 - -
Aed4g2482 224 PANTHER SYNTAXIN PROTEIN 1 191 - -
Aed4g2482 224 MobiDBLite consensus disorder prediction 86 115 - -
Aed4g2482 224 Gene3D - 2 104 - -
Aed4g2482 224 MobiDBLite consensus disorder prediction 87 115 - -
Aed4g2482 224 SUPERFAMILY SNARE fusion complex 152 190 - -
Aed4g2482 224 Gene3D - 156 193 - -
Aed4g2482 224 CDD SNARE_Qc 157 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2482 Aed-Chr4 26888915 26892945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2482 55 224 SNARE and Associated Proteins AT1G28490 60.417 1.21e-75 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2482 K08500 - gmx:100787129 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2482 4 26888915 26892945 Aed3g2505 3 27485696 27489166 PCT