Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2480 ATGGTTACCCTCTCAAAACTCCACTTCTCTCCGGTTCGCCCCACTCTCCATCCAATTCGCTGCGGCATCCACGAGCTCCGCGAAAGAATCCAGACGGTCCAAACCACGCAAAAGATCACCGAGGCCATGAAACTCGTCGCCGCCGCGCGCGTCCGCCGCGCCCAGGAGGCTGTCGTCAGCGGCCGCCCCTTCTCCTCAAACCTCGCCGCAATGCTAAACGACATCACCCAACGCCTCCAAAACGACGACGTCTCCACCCCTCTCACCGAAGTCAGGCCCGTCAAAACTGTTGCCCTCGTTGTCGTCACCTCTGACCGCGGCCTCTGCGGCGGTTTCAACAAATCGGTAATCAGAAAAGCTCTCACCCGAATCGAGGAGTTGAAAAAACTCAACTTGGGGTGCGTTGTTATAAGCGTTGGCAAAAAGGGTAACTCGTTTTTCAACCACACCAACAAAATGAAACACCCTTTTGTTCAAGTTGATAGCTTTATCGAAATTGGTGGTTTTCCCACCGCAAAGGTGGCTCAGGTTATCGCTGATGATGTTTTTTCACTGTTTGTGGTTGAGGAGGTTGATAAGGTTGAGCTTGTGTACACTAAGTTTGTTTCGTTGGTTAGGTTTGAGCCTGTGATTCAGAATTTATTGCCTTTGGGAGAGGTTTGTGATGTGAAAGATGAGATTTTTAGGTTGAGTAGTAAAGAGGGGAAGTTGGCTATGGAGAGGGATGTTGTGAGGTTGAGGAAAGAGGATGAGGTTTTTTCTCCTCTCATGGAGTTTGAGCAGGATCCTGTTATGATTCTTGATGCCATGTTGCCTCTCTATTTGAATAGTCAGGTTTTGAGGGGGTTGCAGGAGTCTGTGGCTAGTGAGCTTGCTGCTAGGATGGGGGCCATGGCGAATGCCACGGATAATGCTGTTGACTTGAGGAAGAGGCTTTCGGTTGAGTACAATCGGGAGCGGCAGGCAAAGATCACTGGGGAGTTGTTGGAGATTGTGGCTGGAGCTGAGGCACTAAAACAAATTGACTGA 1029 0.5024 MVTLSKLHFSPVRPTLHPIRCGIHELRERIQTVQTTQKITEAMKLVAAARVRRAQEAVVSGRPFSSNLAAMLNDITQRLQNDDVSTPLTEVRPVKTVALVVVTSDRGLCGGFNKSVIRKALTRIEELKKLNLGCVVISVGKKGNSFFNHTNKMKHPFVQVDSFIEIGGFPTAKVAQVIADDVFSLFVVEEVDKVELVYTKFVSLVRFEPVIQNLLPLGEVCDVKDEIFRLSSKEGKLAMERDVVRLRKEDEVFSPLMEFEQDPVMILDAMLPLYLNSQVLRGLQESVASELAARMGAMANATDNAVDLRKRLSVEYNRERQAKITGELLEIVAGAEALKQID 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2480 342 PRINTS ATP synthase gamma subunit signature 316 337 IPR000131 GO:0015986|GO:0045261|GO:0046933
Aed4g2480 342 PRINTS ATP synthase gamma subunit signature 192 209 IPR000131 GO:0015986|GO:0045261|GO:0046933
Aed4g2480 342 PRINTS ATP synthase gamma subunit signature 285 304 IPR000131 GO:0015986|GO:0045261|GO:0046933
Aed4g2480 342 PRINTS ATP synthase gamma subunit signature 94 113 IPR000131 GO:0015986|GO:0045261|GO:0046933
Aed4g2480 342 Gene3D ATP synthase, gamma subunit, helix hairpin domain 22 88 - -
Aed4g2480 342 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 25 338 IPR035968 GO:0015986|GO:0045261|GO:0046933
Aed4g2480 342 Pfam ATP synthase 24 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Aed4g2480 342 Gene3D ATP synthase, gamma subunit, helix hairpin domain 233 338 - -
Aed4g2480 342 PANTHER ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE 11 340 - -
Aed4g2480 342 Gene3D - 89 218 - -
Aed4g2480 342 PANTHER ATP SYNTHASE GAMMA CHAIN 11 340 IPR000131 GO:0015986|GO:0045261|GO:0046933
Aed4g2480 342 Hamap ATP synthase gamma chain [atpG]. 20 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Aed4g2480 342 CDD F1-ATPase_gamma 23 335 IPR000131 GO:0015986|GO:0045261|GO:0046933
Aed4g2480 342 ProSitePatterns ATP synthase gamma subunit signature. 324 337 IPR023632 -
Aed4g2480 342 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 23 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2480 Aed-Chr4 26881742 26882770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2480 10 340 Primary Pumps ATPases AT1G15700 65.015 7.88e-148 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2480 K02115 - gmx:100797879 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2480 4 26881742 26882770 Aed4g2480 4 26881742 26882770 ECH