Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2478 ATGGAGGGTACGGCAAACATCAATGATGATAATGCAGCCAATTGTGAAAATGGGTTCCTAAAAATTTTTGGTGGCAATGAAAGCGGTAGCGGCGGTGGTGGCGATGATCATGATCAGGGTGGTGGCAATGTGGATGAGGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGCTATCCTAATGGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACAGGGTTGAACAGATGTGGCAAAAGTTGTAGGCTCAGATGGGCTAATCATTTGAGGCCTAATTTGAAAAAGGGTGCATTCTCCTCTGATGAAGAAAAGCTAATTGTTGATCTTCATGCACAATTTGGCAACAAATGGGCCAGAATGGCTGCTTTGTTGCCTGGGAGAACAGACAATGAGATCAAGAACTATTGGAACACGAGGGTCAAACGCAGGCAAAGGCAGGGTCTCCCTCTCTATTCAGACAACCATGATCATCATCACCATCGTTCCACAACACCAACCCCTCCCACCACACCTTCCCCATGCCTCACCCCATCAGGATCAAACCCCAACATTGTTACAAATTATGAGTTCTTCAATCAAAACCAACAACGACAACAACAGCAACAAGTCCAACAACAACACCAATACCAACAAAAATTCCAACACCAATACCAACATCAACACCAACACCAATACCAACAACAACAACATCAACAACAACATCAATACCCTCTTTCTCCAAATGCACCTCATCATTCCCCTATTAGTTCCCCTATCCAACACAGACAAATCTTCACCTCTTCATCATCACCTCATCACACTTTCTTAGACCCTTCACCTCTTCCACTCTCATCCTCTAATTCACCTTCTCCTCTCTCCTTCACATTCCAAAGACCAGCACCAATGCTAAGCACCCCTCTTCGCTTCAAGCGCTACCGCGCCTCTCCAAGCTACAACAACCACCTCTCTGAGCCTCCTCCTCTCACCAACCAATTCCCTCACCTTGATGGATTCAGGTTCCCAGTTTCTTCAGGCTTTTCTCAGTATTGTCAGCCCTCTTTGTTAGACTCCGATCGAGGCGTTTCCTCTTCGGCTTTCCAACACAAGTTGGAGCTCCCTTCAAACCAGTTTTACAAACTACCACAAGAGCAAGACATTGAGTTCAATGATCCTTCTTTTCAAACTAGTAGTGGCCATCTTGGGGATCTTCTCTTCGAGGCTCAGGCACTGGCTTCGGGTCAGAACTCAAAGAAACGAGGCTACTTGAGTTTGAATGAGGGGAATGATGTGTTTGATGCATGCCAAAGCTTTGAGGACTTGCCAACTAGCTCTCTTTACTGGCCTTCTTCAACTTCTGAACCAAAACCAAAGGAAGAGGCACCGGACTTCAGCAAATTCATGAATGAAGAGGACTTGTCATCATTGCTTACAGTGATTCCATCTTCCAATAATATGCAGGGTCATCATCAAGAGATTGAGTGGCACAACAACAACACAAACAGTGCCCCAGAAGTGTCCAATGTGCAATCCTCAGGTAGTGGCATGACAGATGACAATTTTGGACTTGACATCAAGCCCATAGCTTCATTGTTTCCTCTCTCCAACAACACCACAAACCATGATGAAGAAAACCAAGGATGCTACTCTTGGGACAATTTACCTGGTCTCTGCTAA 1680 0.4548 MEGTANINDDNAANCENGFLKIFGGNESGSGGGGDDHDQGGGNVDEVALKKGPWTTAEDAILMDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSSDEEKLIVDLHAQFGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYSDNHDHHHHRSTTPTPPTTPSPCLTPSGSNPNIVTNYEFFNQNQQRQQQQQVQQQHQYQQKFQHQYQHQHQHQYQQQQHQQQHQYPLSPNAPHHSPISSPIQHRQIFTSSSSPHHTFLDPSPLPLSSSNSPSPLSFTFQRPAPMLSTPLRFKRYRASPSYNNHLSEPPPLTNQFPHLDGFRFPVSSGFSQYCQPSLLDSDRGVSSSAFQHKLELPSNQFYKLPQEQDIEFNDPSFQTSSGHLGDLLFEAQALASGQNSKKRGYLSLNEGNDVFDACQSFEDLPTSSLYWPSSTSEPKPKEEAPDFSKFMNEEDLSSLLTVIPSSNNMQGHHQEIEWHNNNTNSAPEVSNVQSSGSGMTDDNFGLDIKPIASLFPLSNNTTNHDEENQGCYSWDNLPGLC 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2478 559 ProSiteProfiles Myb-like domain profile. 99 149 IPR001005 -
Aed4g2478 559 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 35 554 - -
Aed4g2478 559 MobiDBLite consensus disorder prediction 498 519 - -
Aed4g2478 559 ProSiteProfiles Myb-like domain profile. 46 98 IPR001005 -
Aed4g2478 559 MobiDBLite consensus disorder prediction 185 299 - -
Aed4g2478 559 Gene3D - 106 170 - -
Aed4g2478 559 MobiDBLite consensus disorder prediction 158 299 - -
Aed4g2478 559 Gene3D - 50 103 - -
Aed4g2478 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 153 IPR017930 -
Aed4g2478 559 Pfam Myb-like DNA-binding domain 51 98 IPR001005 -
Aed4g2478 559 Pfam Myb-like DNA-binding domain 104 147 IPR001005 -
Aed4g2478 559 CDD SANT 53 98 IPR001005 -
Aed4g2478 559 MobiDBLite consensus disorder prediction 158 172 - -
Aed4g2478 559 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 35 554 - -
Aed4g2478 559 SMART sant 103 151 IPR001005 -
Aed4g2478 559 SMART sant 50 100 IPR001005 -
Aed4g2478 559 MobiDBLite consensus disorder prediction 26 45 - -
Aed4g2478 559 MobiDBLite consensus disorder prediction 498 521 - -
Aed4g2478 559 SUPERFAMILY Homeodomain-like 49 145 IPR009057 -
Aed4g2478 559 CDD SANT 106 147 IPR001005 -
Aed4g2478 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 98 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2478 Aed-Chr4 26869453 26872731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2478 31 189 MYB Transcription Factor Family AT4G26930 63.125 3.70e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g2478 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2478 - - gmx:102659401 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2478 4 26869453 26872731 Aed4g2478 4 26869453 26872731 ECH