Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2471 ATGAGGAAGATGTGTGTCTCGGATCATCGGTTGTTTCTTCTCTGCATTCTTTGTGGCCTCTGTCTTTCTCTGCAGTTCACAACGGGTCATGTAGATTCAAATGCTGGAAGAACTGTGATTCAGGAGGATGGTAATCATAAAATACACTGTTCTAGAGAAAGAAGTAGAACAGCTTGGAAGATCATTCAAGAGTATTTGATGCCCTTTGTGGAGAAAGAAAAATATCACATCTCAAAAAGGTGTAGGATTCACCCTGAAAATGACATTTACAGAGATCAAGAGCAACATAAGTTTCATATAGATATAAACGAATGGCAGTGTGGGTACTGTAAGAAAAGTTTCTATGAAGAGAAACATCTTGATCAGCATTTTGACAACAGACACTCCAATTTGCTTAATTTGAGTGAAAGGCAGTGCTTAGCAGATATATGTGGTTCATTGCACTGTGACCATGAAATAAATTCTGGATCAAAAAAGTCAAAGTGCAATCCGGCTGCTGCTGCAAGAAATAAACATCTATGTGAGAGCTTAGCTGATAGTTGTTTTCCAGTCAATGAGGGCCCTGCAGCAAGCCGACTTCATGAATTCTTCTTGCACCAATTCTGTGATGCACACAGCTGCACTGGAAGTTGGAAACCATTCTCCAGAGGGAGCAGGAAGAAGACAAATGTGTTCTACATCTTTGTGTCTATTTTTCTTGTGATACTGCTGCTACTATACTATCTCTACATTTACTTATATCAGAGAGGAATGAAAAGAGAAACTCAAGTGCTGAAGCGCATCTCACAAGCCAGCAGAAAGAAAAAGCCATCTTAA 816 0.3958 MRKMCVSDHRLFLLCILCGLCLSLQFTTGHVDSNAGRTVIQEDGNHKIHCSRERSRTAWKIIQEYLMPFVEKEKYHISKRCRIHPENDIYRDQEQHKFHIDINEWQCGYCKKSFYEEKHLDQHFDNRHSNLLNLSERQCLADICGSLHCDHEINSGSKKSKCNPAAAARNKHLCESLADSCFPVNEGPAASRLHEFFLHQFCDAHSCTGSWKPFSRGSRKKTNVFYIFVSIFLVILLLLYYLYIYLYQRGMKRETQVLKRISQASRKKKPS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2471 271 ProSitePatterns Zinc finger C2H2 type domain signature. 107 128 IPR013087 -
Aed4g2471 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 130 IPR013087 -
Aed4g2471 271 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 271 - -
Aed4g2471 271 PANTHER ZINC FINGER PROTEIN-RELATED 9 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2471 Aed-Chr4 26837378 26841180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2471 27 271 C2H2 Transcription Factor Family AT5G63280 58.468 3.58e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g2471 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2471 - - gmx:100527694 478.018