Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2458 ATGGTTTCCTTTAAAAATTACCTGCTTTATAAAAGAACAGAGAACCCATTGCATATTCTCAAACCTCGCAACATCTTCTTTTTCTTACCGAAACTAAATGGTACCTTGAGACATTGCCATTCCCGGGTTAAAAATCTGAAATTTACGCCAAACGAGAAGCCAAACAGGGTGGGGCTTTTTTGGGACTTGGACAATAAGCCACCCAATTCAATCCCACCTTATGAAGTTGCAAATAAGTTGAGAATAGCTGCATCTTCATTTGGGGTTGTTCGTTATATGGTGGCTTATGCAAATAGCCACACTTTCAGCCATGTACCTCACTTTGTGAGGGAGAGTAGGAAAGAGAAGGAACTGTTGCATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATCAACCTCATCGTTGTAAGGTTTGTGGGAGAAAGTTTCATACTAATGACAAGCTTGTTAATCATTTCAAGCAATTGCACGAGCGTGAGCACGCGAAGAGGACGAACCAGATAGAGTCTGCTAGGGGGAGCAGGAGGGTGAAGCTGGTGGCCAAGTATTCTATGAAATTGGACAAGTATAAGAAGGCTGCAAGTGATGTTCTCACTCCCAAAGTAGGGTATGGTTTGGCAGATGAGCTCCAAAGGGCTGGCTTTTGGGTTCGAACCGTGTTGGACAAGCCACAAGCTGCAGACCAAGCATTGCAAAGCCATATTGTGGATATCATGGATCATAGGCGGGTTGAGTGTGTGGTCCTTGTGTCTGATGATTCTGACTTTGTTGATGTGATACAGGAAGCCAAGATGCGGTGTTTGAAGACGGTTGTCATCGGGGATATTGATGACGGCTTCTTGAAGAGGACTGCTGATACTGCATTTTCTTGGGAGGAGATTCTAATGGGGAAAGCTAAAAAGCAGGCTGTTTCGGTTGTGAAAAACTGGAAGGATCGAACAATTCATTTGATAAGCCTGCTGGTTGTTGTCCTTTCTGGTGGGATTGATGCTTTAGATGAGGTGTTTGATATACTGGAATTGATTCAACTGGAATGTGGATTGGACCAAAGCTTCCTGTTAGTCTGTTGA 1071 0.437 MVSFKNYLLYKRTENPLHILKPRNIFFFLPKLNGTLRHCHSRVKNLKFTPNEKPNRVGLFWDLDNKPPNSIPPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPHFVRESRKEKELLHRLENKGVIKPNQPHRCKVCGRKFHTNDKLVNHFKQLHEREHAKRTNQIESARGSRRVKLVAKYSMKLDKYKKAASDVLTPKVGYGLADELQRAGFWVRTVLDKPQAADQALQSHIVDIMDHRRVECVVLVSDDSDFVDVIQEAKMRCLKTVVIGDIDDGFLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRTIHLISLLVVVLSGGIDALDEVFDILELIQLECGLDQSFLLVC 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2458 356 CDD PIN_LabA-like 145 275 - -
Aed4g2458 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
Aed4g2458 356 PANTHER - 41 315 - -
Aed4g2458 356 Gene3D - 48 295 - -
Aed4g2458 356 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 41 315 - -
Aed4g2458 356 Pfam NYN domain 206 274 IPR021139 GO:0004540
Aed4g2458 356 SUPERFAMILY beta-beta-alpha zinc fingers 130 160 IPR036236 -
Aed4g2458 356 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2458 Aed-Chr4 26717774 26719156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2458 43 315 C2H2 Transcription Factor Family AT4G12240 63.538 4.78e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g2458 NYN 5.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2458 - - gmx:100789840 548.51