LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g2457	ATGGATTTCCCTCCATACCGTCGATCCCAGTTGCGCAGCAACACTTACCGTGCCCTGACTCACCTCCTCTCTCACCTTTCTGCGTACAACGCTTCAATTCAACCCCTCAGCACTCCCGGTAATGGCAGTGGTAGAATGGATCAAGAAAACCAGGAACAGGAGCTTAGGTCCTCTGAAGTTGTTGTTTCTGATTTTTTGGATCCTGAGAATCCTATTCACCAGAAGGATATACAGGAGGTTCAGGAGACCATTGAGAGGGTTGGAGACAAGGATATGGATTTTGCTTCCAACAAGATGGTCCTATATGATATAGAACACATGATGGGAATAGAGGACATGTCTACCCAAGCAAATGGTTTTGATAAGGAGCAGAAGCTAATAAATGAGTTCGAGCTGGTTATGAAAGGAACTGAAGACCTTATTTGTGATGGTGATTTAATCCCCCTGAACTTGGGATTAGATGAGAAACATAATGATGGCAGTGAAGTTGGGTTGATGCATTACCAAGTAGAAATGGAAGAGGGAGAAATTTCTGGAGATTTGGGAATAGATGGCAATTCAATTGATGTGTCTTCTGCTGATGCTTTAATTTTACAACAGATGGAAGTAGATGAGGTTCAGAAGCCTGAAAATCCTTCTAAGATTGAGAATCAAAAAAAGGAAAAAGGCTATGACTCTAATTCCTCTATGGTAAATGCAGTTCAAGATGCCAATAATAGTGGAGAAGTGGAGCCTAGAACTAATGGCAAGAAAGGGATTGCATGCGGAATTGAAGTAGCAATTTCTCAAGAAATCATTGAATGTCAGAAGGAAGATAAAACAAAGTTGGATAGTGCTAGTAAAAAGAGTAACCGTGGTGGGAACAAAGGAAAAAAGAAGAAAGCAGATAGAAAGAAGAGAGCAGAAAAGAACAAAAAACTTGGTGTTAAAAGACTGCAGATACAGCATGTACAGAAACTGAAAGCAGTCTCACATTGTCGCCATTATCTCATGGGAAGGTGCCATGAGGGTGACAAGTGTCAGTTTTCACATGATGTGGTGCCTCATACAAAATCCAAGCCATGTACTCACTTTGCTCGTCACTCTTGCATGAAAGGGGATGATTGCCCTTATGATCACCAGCTCTCAAAATATCCTTGTATCAATTTTGTGTCCAAAGGCTCTTGTTATAGAGGTGATGCTTGCTTGTTTGCTCACCAGGTGCCAACCAAAGAAGACATCCCTACACCTTCAAATATGTGCAGACCAGAGTTGTCTCCATTTCTGTCTGGAAATGCAAATTCCAGCACACCACTTAACAACAACCATGGCTCTAGCTCTGTCCAGAAAAACCGCTTTACTAATTCTGCAGGAATTCATTCTTGCATCAATGTTGAACATAAGGTGACAAACACTGTACAGAAACAGCCTACACCCCCTAAAGGAATTAGTTTCATCAATCTTGCAAAACCCAGCCCAAGTTCACTGAATCAAGGCACAGTAACAACCAAGGAAAGTCCTGTACAAATTGGGACCCGTGAAGATCAAAGTGCATTTCACAAAACTCAAAACAAAGTGGAGATTCCTAAGAAATTGTCAGCTGTGACAGCTAAGGGAATTAACTTTCTTTCTTTTGGCCAAGGCTCTGTCAGCAGTTTTAAAAGTGCAATTCATTCCAATGTGAATAGGGAAAATGGTATCAAGTTGCCTCAGTTATTCAATTTTGGTTTGCCTGAGCAGGCAAATTCCTCCCTAAATAAAGATAGTTACAACAAAGCTAGTGACATAAGAAAACAAAATGTACCACAGACTGATCTATTTTTAAATGAGATTTTAGGAAAAAATCAATATGTGGCAGAAAGAACGACATCAAAGCTTCCAGAGAAAACCTCAGTAGATGTTTTTATGAGGAATCACAGCCATAGTAGATCAGTTCAAGAGGGAAAAACGTCATCTGATATTTCTCAAAGTTCAAAAGGCCAAAAGGCACTCTTATCAACTCTGGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATAG	2025	0.404	MDFPPYRRSQLRSNTYRALTHLLSHLSAYNASIQPLSTPGNGSGRMDQENQEQELRSSEVVVSDFLDPENPIHQKDIQEVQETIERVGDKDMDFASNKMVLYDIEHMMGIEDMSTQANGFDKEQKLINEFELVMKGTEDLICDGDLIPLNLGLDEKHNDGSEVGLMHYQVEMEEGEISGDLGIDGNSIDVSSADALILQQMEVDEVQKPENPSKIENQKKEKGYDSNSSMVNAVQDANNSGEVEPRTNGKKGIACGIEVAISQEIIECQKEDKTKLDSASKKSNRGGNKGKKKKADRKKRAEKNKKLGVKRLQIQHVQKLKAVSHCRHYLMGRCHEGDKCQFSHDVVPHTKSKPCTHFARHSCMKGDDCPYDHQLSKYPCINFVSKGSCYRGDACLFAHQVPTKEDIPTPSNMCRPELSPFLSGNANSSTPLNNNHGSSSVQKNRFTNSAGIHSCINVEHKVTNTVQKQPTPPKGISFINLAKPSPSSLNQGTVTTKESPVQIGTREDQSAFHKTQNKVEIPKKLSAVTAKGINFLSFGQGSVSSFKSAIHSNVNRENGIKLPQLFNFGLPEQANSSLNKDSYNKASDIRKQNVPQTDLFLNEILGKNQYVAERTTSKLPEKTSVDVFMRNHSHSRSVQEGKTSSDISQSSKGQKALLSTLAFAAEHESDIKMK	674

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g2457	674	ProSiteProfiles	Zinc finger C3H1-type profile.	320	347	IPR000571	GO:0046872
	Aed4g2457	674	PANTHER	PROTEIN SUPPRESSOR OF SABLE	169	649	-	-
	Aed4g2457	674	Gene3D	-	310	378	-	-
	Aed4g2457	674	SUPERFAMILY	CCCH zinc finger	378	404	IPR036855	GO:0046872
	Aed4g2457	674	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI	169	649	IPR045124	GO:0003723\|GO:0045892
	Aed4g2457	674	MobiDBLite	consensus disorder prediction	285	306	-	-
	Aed4g2457	674	Pfam	CCCH-type zinc finger	325	345	IPR041367	-
	Aed4g2457	674	MobiDBLite	consensus disorder prediction	630	652	-	-
	Aed4g2457	674	MobiDBLite	consensus disorder prediction	272	306	-	-
	Aed4g2457	674	MobiDBLite	consensus disorder prediction	204	228	-	-
	Aed4g2457	674	MobiDBLite	consensus disorder prediction	207	223	-	-
	Aed4g2457	674	SMART	c3hfinal6	319	346	IPR000571	GO:0046872
	Aed4g2457	674	SMART	c3hfinal6	377	401	IPR000571	GO:0046872
	Aed4g2457	674	SMART	c3hfinal6	349	375	IPR000571	GO:0046872
	Aed4g2457	674	ProSiteProfiles	Zinc finger C3H1-type profile.	350	376	IPR000571	GO:0046872
	Aed4g2457	674	SUPERFAMILY	CCCH zinc finger	324	345	IPR036855	GO:0046872
	Aed4g2457	674	ProSiteProfiles	Zinc finger C3H1-type profile.	379	402	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g2457	Aed-Chr4	26717039	26724371	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Aed4g2457		zf-CCCH_4	1.4e-05	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g2457	-		-	gmx:100816509	1076.62