Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2454 ATGGGTAGGGGCGGTACCGCCGCGGCGGTGGCGGCGGTCGAGATCGCCGAACATGGTTCAAGGCCGGGTTTTTTCAAAGAACCACGATACAGGGGCGTCAGAAAAAGACCGTGGGGCAGATTTGCCGCCGAAATCAGAGACCCTCTGAAGAAATCCAGGGTGTGGCTCGGAACCTTCGACACCGCCGAGGACGCGGCGCGTGCCTACGACACGGCGGCGAGAAACCTCCGGGGACCTAAAGCCAAGACCAATTTTCCTCTTTCTCCGCCGTTCTACCATCCCGATCCGTTTTCCGATCATAGATACTTCGCCGGAGCCGGCGAAGATTTCCACGATCACCGGCGTCCCACCTCCAGCGGCATGAGCAGCACCGTCGAGTCTTTCAGCGGTCCACGCGCCGCTGTGCCGTCGACAACGCCATTAACTTTCGGCCGGAGATATCCCCGGACACCACCCGTCGTCCCGGAGGACTGCCGCAGCGATTGCGACTCTTCGTCCTCAGTCGTAGAAGACGGCGACGGCGACAACGTGGCGTCGTCGTTCCGGCGAGAACCGTTGCCGTTTGATCTAAACGCGTTGCCGTTGGACGATGCTGACGTGGCAACTGATGATTTGTTCTGCACCGTTCTTTGCCTCTGA 639 0.6025 MGRGGTAAAVAAVEIAEHGSRPGFFKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDTAEDAARAYDTAARNLRGPKAKTNFPLSPPFYHPDPFSDHRYFAGAGEDFHDHRRPTSSGMSSTVESFSGPRAAVPSTTPLTFGRRYPRTPPVVPEDCRSDCDSSSSVVEDGDGDNVASSFRREPLPFDLNALPLDDADVATDDLFCTVLCL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2454 212 MobiDBLite consensus disorder prediction 117 136 - -
Aed4g2454 212 PANTHER ETHYLENE RESPONSE FACTOR 1 194 - -
Aed4g2454 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 194 - -
Aed4g2454 212 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Aed4g2454 212 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Aed4g2454 212 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Aed4g2454 212 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Aed4g2454 212 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Aed4g2454 212 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Aed4g2454 212 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Aed4g2454 212 MobiDBLite consensus disorder prediction 115 178 - -
Aed4g2454 212 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2454 Aed-Chr4 26689256 26689894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2454 2 212 AP2-EREBP Transcription Factor Family AT1G50640 58.079 6.74e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed4g2454 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2454 K09286 - gmx:100782025 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2454 4 26689256 26689894 Aed4g2454 4 26689256 26689894 ECH
Aed4g2454 4 26689256 26689894 Aed3g2534 3 27653266 27653892 PCT