Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2452 ATGGTTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCGCTGATATCGATCAAGCTCTCTTCTCTGATCCATCAAACTCTGAACTTCTCGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGGCTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGTAGATTCAGTGCTGCATAACACTGATATTTTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATCCCACAGATGTTGAACCAGAGCCATTGGAGGAAAAGTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCTGTTGGATAATTCAGTGGCTAAAGTTTCATTTCTTACTCCTACTTCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAATTGATGTTCAATTGTCTGCTCTTAAGAAATATGTCCCTACAATCTGGCAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGCCACTTGGAGAGAAGCAGAGCTCGAGTCCTGGGACAAAAAGGCTGGAGTTGGGCAAGTTGTTTTCCGAGGCGATGGAAGTTCTGTGAAACTTGGTGCAGAAGAAATGGCACTGTCTGAGCATGCCGAAATGAGTGGCTTGGAGAGTGATTCCAGCTTAGAACAATCCGATTCCAGTGAGTATGAGGAAGAGGAATCACAGGGTTTAGGATTTCTGGAGAGTACCAACCTACAGAGAGGCATTCAAACTGAAACTGTGACATTTGCCACGTGGGAGAACCACACCAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGATTAGGATTAACCGGACAAGGAATGCTGGACCCCATTCCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATTACGCACTCGAGTCTCATAAAAGGGAAGAGAACAAAGAGAAGCAAGGCAAGAAGAAACGGAGCCGAGGTGGCAAGAGAAAACGTGAGAAGAAATTCGCAGAAGCAAATCGTGCAGCAAAAGAGGAAGAAGAACCGGCATCAGATGTCTTTGCACTGATAAACAATCAGCTGGCAATGCACAGTGAGGCTGTTCACAGTGGATCAACAAAGAAGCAGCAAAGTAAAGGTTCCGAGGAGGGTAAGAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAAGATTTGAAGATGAGGGTTGAAAAGCTTGAGCACATTGTGAATGCCAATAGAAAAGAGAAGGCTGTTTATGATGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGTAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATACAGTTGTTAGTAAAGAAAAGGAGAAGAGATGGCTCAAGTTTTAG 1488 0.4456 MVSEEERVLENQLELQLQEQRDSLADIDQALFSDPSNSELLAVHEELVQAIKDAEEGLLHLKRARLLQEVDSVLHNTDIFTEEEKVEPLDPTDVEPEPLEEKCYSVGSKCRFRHKDGRWYNGQVVLLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGIDVQLSALKKYVPTIWQQSLVGSSIWAVSTANAATWREAELESWDKKAGVGQVVFRGDGSSVKLGAEEMALSEHAEMSGLESDSSLEQSDSSEYEEEESQGLGFLESTNLQRGIQTETVTFATWENHTRGIASKMMANMGYREGMGLGLTGQGMLDPIPVKVLPPKQSLDYALESHKREENKEKQGKKKRSRGGKRKREKKFAEANRAAKEEEEPASDVFALINNQLAMHSEAVHSGSTKKQQSKGSEEGKKVDRRALVAYEEEVKDLKMRVEKLEHIVNANRKEKAVYDGAMRKLNETRKALVDAEAVHASASNTVVSKEKEKRWLKF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2452 495 Pfam G-patch domain 294 337 IPR000467 GO:0003676
Aed4g2452 495 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Aed4g2452 495 MobiDBLite consensus disorder prediction 364 382 - -
Aed4g2452 495 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Aed4g2452 495 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Aed4g2452 495 Gene3D - 119 178 - -
Aed4g2452 495 SMART G-patch_5 292 338 IPR000467 GO:0003676
Aed4g2452 495 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Aed4g2452 495 Coils Coil 44 64 - -
Aed4g2452 495 MobiDBLite consensus disorder prediction 340 382 - -
Aed4g2452 495 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Aed4g2452 495 Coils Coil 424 451 - -
Aed4g2452 495 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 3 495 - -
Aed4g2452 495 Coils Coil 10 30 - -
Aed4g2452 495 MobiDBLite consensus disorder prediction 241 275 - -
Aed4g2452 495 MobiDBLite consensus disorder prediction 398 418 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed4g2452 G-patch 4.3e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2452 - - gmx:100794921 771.541