Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2440 ATGTCATATGAAATCTTGGTTTTGTCAGTTTCTGTAACCAGGCCAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAGGCTGTGAAACTCGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTCCCTGCATCTGGACCAGAAACCCAGCGACATGCATCTGCTATAAGAAGGAAAATTACGATATTAGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGGTCCCTGCAAAAACTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTGTAAATTTGAGGACAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATAAAAACAGATGCAATGACCAGAACTGTTGGCCTGGACAACAGTGGTCTAGTTGGTCTTCAGCGGCAAATTATGAAAGCAGAGCAAGATGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACTAAACATATTGCGTTGGCTGTGAATGAAGAGCTGGGTCTACATACCAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAGTGTTAAACAAACGTACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTCTATCAGTGATTGGTATAGTGGGTTTGGTTGTTGTCATATGGCTGTTGATCAAATATTTGTAA 738 0.4201 MSYEILVLSVSVTRPMASSSDSWMKEYNEAVKLADDITGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKVPAKTEKEMNRRKDMLVNLRTKVNQMASTLNMSNFANRDSLLGPEIKTDAMTRTVGLDNSGLVGLQRQIMKAEQDDGLEKLEETVISTKHIALAVNEELGLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVGLVVVIWLLIKYL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2440 245 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 16 240 - -
Aed4g2440 245 SUPERFAMILY SNARE fusion complex 147 210 - -
Aed4g2440 245 CDD SNARE_Qc 152 209 - -
Aed4g2440 245 PANTHER SYNTAXIN 16 240 IPR045242 -
Aed4g2440 245 Pfam SNARE domain 186 237 IPR000727 -
Aed4g2440 245 Gene3D - 153 213 - -
Aed4g2440 245 SMART tSNARE_6 144 211 IPR000727 -
Aed4g2440 245 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 149 211 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2440 Aed-Chr4 26585181 26587320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2440 16 245 SNARE and Associated Proteins AT1G16240 71.674 1.65e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2440 K08503 - gmx:100794038 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2440 4 26585181 26587320 Aed4g2440 4 26585181 26587320 ECH
Aed4g2440 4 26585181 26587320 Aed3g2551 3 27746385 27748929 PCT