Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2425 ATGCCACAGAGAAAAGGTTGCAGTTTTCTGAATGAGCCTCGTCTTGTTGCTAGGAAATTCTTGGCACGGCCTCAGATTGAGGGTGTTGGGGCTGTTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGTACTTTGATCCCTTCATTTTGTTGGATGAATTCTCAGTTACTGCTCCTGCTGGTTTTCCTGATCATCCCCATAGAGGCTTTGAGACGGTCACATACATGTTGGAGGGAGCTATAGTGCATGAAGATTTTGAAGGGCATAAGGGCACAATAGAAGCTGGTGACTTGCAATGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGAACCCAAAAGGGTCTACAGTTGTGGATCAACCTTCCTTCCAAATATAAAATGATTGAACCAAGGTATCAAGAAGTGTTGAGTAAGGACATAGCAGAAGCTGAAGATGATGATGGTATCAAAGTTAGAGTTATAGCTGGGGAAGCACTAGGGATAAAGTCTCCAATCAACACAAGGACACCAACCATGTTCTTGGACTTCTTTCTCAAACCTGGAGGGCACTTGCAACAACCTATACCAAAAACTTGGAATGCTTTTGTGTATGTATTGGAAGGAGAGGGTGTGTTTGGAAACATGAAATCTCAGCCTGCAAACTCTCACCACATTCTTCTTCTTGGTCCTGGGGATGGCCTAGAGGCATGGAACAAATCTTCTAAGCTCCTTAGGTTCATTTTGGTTGGAGCAGAACCTTTGGGGGAGCCTCTAGTGCAACTTGGACCCTTTGTCATGAACACACAAGAACAGATTGACCAAACCATTGATGATTTTGAGAACTTTGCCAACGGATTTGAGAAAGCTAGACACTGGAGATCTGAAACCGAAATTAATTCATCTTGA 906 0.4393 MPQRKGCSFLNEPRLVARKFLARPQIEGVGAVVRRSIGRFELKYFDPFILLDEFSVTAPAGFPDHPHRGFETVTYMLEGAIVHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLPSKYKMIEPRYQEVLSKDIAEAEDDDGIKVRVIAGEALGIKSPINTRTPTMFLDFFLKPGGHLQQPIPKTWNAFVYVLEGEGVFGNMKSQPANSHHILLLGPGDGLEAWNKSSKLLRFILVGAEPLGEPLVQLGPFVMNTQEQIDQTIDDFENFANGFEKARHWRSETEINSS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2425 301 CDD cupin_pirin_C 177 253 - -
Aed4g2425 301 CDD cupin_pirin_N 31 129 - -
Aed4g2425 301 Pfam Pirin 33 126 IPR003829 -
Aed4g2425 301 Gene3D Jelly Rolls 27 280 IPR014710 -
Aed4g2425 301 Pfam Pirin C-terminal cupin domain 181 284 IPR008778 -
Aed4g2425 301 Gene3D Jelly Rolls 148 254 IPR014710 -
Aed4g2425 301 SUPERFAMILY RmlC-like cupins 14 294 IPR011051 -
Aed4g2425 301 PIRSF Pirin 12 293 IPR012093 -
Aed4g2425 301 PANTHER OS09G0484800 PROTEIN 5 299 - -
Aed4g2425 301 PANTHER PIRIN-RELATED 5 299 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2425 Aed-Chr4 26491932 26495072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2425 13 290 Calmodulin-binding Proteins AT3G59220 58.929 4.90e-124 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2425 K06911 - gmx:100802484 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2425 4 26491932 26495072 Aed4g2425 4 26491932 26495072 ECH
Aed4g2425 4 26491932 26495072 Aed3g2558 3 27793847 27798015 PCT