Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2421 ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGCGCCACCGGCGGCAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGGCAGCCAGCAAACACAAAGCTATCAGGCAACAAGACAATTAGGAGGATTAGAGTTCGCGGCGGGAACGTGAAGTGGCGTGCTTTGAGGCTTGATACTGGGAACTACTCATGGGGGAGTGAGGCTGTGACCCGCAAAACAAGGGTTCTTGATGTGGTGTACAATGCATCCAACAATGAGCTTGTTCGGACTCAGACATTGGTCAAGAGTGCCATTGTTCAGGTCGATGCAGCGCCCTTCAAACAGTGGTATCTGCAGCATTATGGCGTTGAAATTGGCCGCAAGAAAAAGAACTCTGCAGCTCCTGCCAAGAAGGAAGGGGAGGATGGTGAAGCTGCAACTGAGGAGGTGAAGAAGAGTAACCATGTTTTGAGAAAATTGGAAAAGCGAAAAGAGACCCGGGTGCTTGATCCTCACATTGAAGAACAATTCGGAGGCGGTCGCCTTTTGGCTTGTATCTCATCTCGACCTGGTCAATGTGGTCGTGCTGATGGATATATATTAGAGGGCAAAGAGCTGGAATTTTACATGAAGAAGCTTCAGAAGAAGAAGGGCAAGGGTGCTGCTTAA 660 0.4909 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSGNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKNSAAPAKKEGEDGEAATEEVKKSNHVLRKLEKRKETRVLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2421 219 Pfam Ribosomal protein S8e 5 198 IPR022309 -
Aed4g2421 219 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Aed4g2421 219 MobiDBLite consensus disorder prediction 125 148 - -
Aed4g2421 219 Coils Coil 140 160 - -
Aed4g2421 219 MobiDBLite consensus disorder prediction 1 37 - -
Aed4g2421 219 Gene3D - 26 214 - -
Aed4g2421 219 MobiDBLite consensus disorder prediction 11 26 - -
Aed4g2421 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 219 IPR001047 GO:0003735|GO:0005840|GO:0006412
Aed4g2421 219 Gene3D Ribosomal protein S8e, subdomain 109 177 IPR042563 -
Aed4g2421 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 219 - -
Aed4g2421 219 CDD Ribosomal_S8e_like 5 198 - -
Aed4g2421 219 TIGRFAM eS8: ribosomal protein eS8 1 200 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2421 Aed-Chr4 26462234 26468817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2421 1 207 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.092 2.04e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2421 K02995 - gmx:100527325 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2421 4 26462234 26468817 Aed4g2421 4 26462234 26468817 ECH