Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2417 ATGGATTCTCCACAATCTGTTGTGTCACCCTTCAGGAGCTCAGTGTTGGGTGAGGGTGAGAAGCACAAGTCTGATGTTTTCTCAGGAAACTCTAGTCCTTTGTCCAAGGACATTGAAGTGAATGGGAAGGAAGTTGTCATGTCTAATGTAGAAGAATTTCTTGGAGTGCTTGATGTTTACATACATCAAGCCAGGGACATTCAGAACATTTGCATATACCACAAGCAAGATGTTTATGCTAAGATTTGCCTGACCAGTAACCCTGAGATCACTGTGTCTACCAAAACCATCAATGGAGGAGGAAGGAACCCTGTGTTCAATGACAATCTTCGTATCGATGTTAGGACTGTTGATGCTTCTCTCAAGTGTGAGATATGGATGCTTAGCAGGGTGAAGAACTATCTTGAAGACCAGTTGCTTGGTTTTGCTTTGGTACCCTTGTCTGAAGTACTAGTCCAGCAGAATGGGAAACTTGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTGTTCCATTCCCCTTCAGGTTTTGTTCAGTTGTCGCTCTCTTACACTGGTGCTTCACCCGATGTTATGGCAATTCCTGCAATGCCAAACAAGGTGGCCACGGATGCCGCCACAGTGCAGGACTCAGAATCGTCCGAGTCACTGGCCCGGGATTTAGACAGAATTGAGTTCCCGGATCCAAAGATTGTGAATGAAGACCACTTGATGGTTTCAGAATACTTCGGCATTCCATGTGAGGAGACTCAGTGTTCTGATAGCTTGGCTGTTACATCTGATGCTGAAAACCACAGTTCTGAAGCCGGTGGTGTTCGGCTTGTGGAAAGCTTCTCAGCATGCAGTGTTGAGTCTGTTCAGCCAACAACTAAGGTTGATTCCCCTCCTAGCAGTGTGTCAACAAATGGGGTTTATTCCCCTTCAGTGCCTGCAAGCTCAGAAATAGAATCATCTGATGCTGCTGCTTCTAAGTCTCCCATTCAGGAGCAAGTTTCAGGCACCAAAGAGGACAAAAATGTGAATGCCAAAGATGGTGAGAGTAATTCCTCAAGTGGGGTTCCTAGTGACTCATTATTCCCTAAGCCTGTTGTGAGTGTGAACATTGAGCCTGAGCCAAAGGTGGTGCAGCAGGATATAGTAGACATGTACATGAAAAGCATGCAGCAATTCACTGAGTCACTAGCAAAAATGAAGCTCCCTATGGACTTGGAAAGTGAACCAACTAGTTCAGGAAATTCAACCACTGATCAGAAACTGCAGCCATCAAAGAGCAATAATTCCCGTGTGTTTTATGGCAGCAGAGCTTTCTTCTGA 1311 0.4508 MDSPQSVVSPFRSSVLGEGEKHKSDVFSGNSSPLSKDIEVNGKEVVMSNVEEFLGVLDVYIHQARDIQNICIYHKQDVYAKICLTSNPEITVSTKTINGGGRNPVFNDNLRIDVRTVDASLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQQNGKLEKEFSLSSTDLFHSPSGFVQLSLSYTGASPDVMAIPAMPNKVATDAATVQDSESSESLARDLDRIEFPDPKIVNEDHLMVSEYFGIPCEETQCSDSLAVTSDAENHSSEAGGVRLVESFSACSVESVQPTTKVDSPPSSVSTNGVYSPSVPASSEIESSDAAASKSPIQEQVSGTKEDKNVNAKDGESNSSSGVPSDSLFPKPVVSVNIEPEPKVVQQDIVDMYMKSMQQFTESLAKMKLPMDLESEPTSSGNSTTDQKLQPSKSNNSRVFYGSRAFF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2417 436 MobiDBLite consensus disorder prediction 404 430 - -
Aed4g2417 436 SMART C2_3c 56 159 IPR000008 -
Aed4g2417 436 MobiDBLite consensus disorder prediction 397 436 - -
Aed4g2417 436 MobiDBLite consensus disorder prediction 285 334 - -
Aed4g2417 436 CDD C2 57 164 - -
Aed4g2417 436 Gene3D C2 domain 51 214 IPR035892 -
Aed4g2417 436 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 55 188 IPR035892 -
Aed4g2417 436 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 436 - -
Aed4g2417 436 Pfam C2 domain 55 161 IPR000008 -
Aed4g2417 436 MobiDBLite consensus disorder prediction 285 363 - -
Aed4g2417 436 PANTHER EXPRESSED PROTEIN 1 436 - -
Aed4g2417 436 ProSiteProfiles C2 domain profile. 30 162 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2417 Aed-Chr4 26402642 26405373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2417 24 216 Phospholipase D Gene Family (Wang group) AT2G42010 21.834 5.72e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2417 - - gmx:100804602 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2417 4 26402642 26405373 Aed4g2417 4 26402642 26405373 ECH
Aed4g2417 4 26402642 26405373 Aed3g2562 3 27812720 27814003 PCT