Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2415 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGTCTGAAGGAATACTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGTGTAACCGGTCGTGCTCGCGGATTTGGTTTCGTTGTCTTCGCTGATCCTTCTGTTGCAGAAAGAGTCATTATGGATAAACACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCAAAATATAAATAGGCAATCTGGTAGTGCACATGCATCTCCTGGTCCTGGACGCACGAAAAAGATTTTTGTTGGTGGTTTACCATCAACCATCACCGAAAGTGATTTTAAGACGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTTATGTATGATCATAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACCTATGATTCTGAAGAAGCTGTGGATAGAGTTCTTTACAAAACTTTTCATGAACTTAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAACTTTCCCCTGGTCCCAGCCGAAGCCCGTTGATAGGATATAACTATGGTTTGACTAGGGCCAGTACCTACCTAAACAGTTATGCTCAGGGTTATAATATGAGTCCAATAGGAGGATATGGAGTCAGGATGGACGGTAGATTTAGTCCTCTTACTAGTGGTAGAAGTGGGTTTACTCCTTTTGGCAACACTGGTTATGGAATGGGAGTGAATTTGGATTCAGCAGGATTGAGCCCAAGCTTTGGAGGGACTTCCAATTATGGGAGCAATTTAGGATATGGTCGAATATTTAGTCCTTTCTATAGCGGCAACTCTGGCAGATATACCACTCCTAATCCTATAGGCTATAGTGGGGGTAATGGGAGAAGCGATTCTCTTATGAACTCACCTTCTCGGAATGTATGGGGAAATGGGGGCCTCAATAATGCCAATAACCCCGTCAGCCCCAGTCCTTTCCTAGGATCTGGAAGTGGGGCTTTCGGTGTTTCAATTGGAAATAGTGGCACAGGTTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGGGCTGCTTCTGGCTATGGTACTGGGAATAATGTTTATGAAGGTGCAGATAGCAGCTTTGGATTAGGTGGGGGAGGGTATGGAAGAAACAGCAGTACTGGTGTGACTCCATCCTCTTCATTTAATGTGTCAACTGGTGGTTATGATGGATCCTATGGGGACTTGTACCGCAGTGGCAGTGGTTCGGTTTACAATGACTCTGCTTGGCGGTCTGCTGCGTCTGAGATTGATGGTTCTGGCTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAATAGAGGTAAGATTTTAAGCTACTTGTTTCCAAAAGAAAATTAG 1473 0.4453 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQNINRQSGSAHASPGPGRTKKIFVGGLPSTITESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLTRASTYLNSYAQGYNMSPIGGYGVRMDGRFSPLTSGRSGFTPFGNTGYGMGVNLDSAGLSPSFGGTSNYGSNLGYGRIFSPFYSGNSGRYTTPNPIGYSGGNGRSDSLMNSPSRNVWGNGGLNNANNPVSPSPFLGSGSGAFGVSIGNSGTGWGPSIPAQGGGAASGYGTGNNVYEGADSSFGLGGGGYGRNSSTGVTPSSSFNVSTGGYDGSYGDLYRSGSGSVYNDSAWRSAASEIDGSGSFGYGLGGIASDDPVKSSEGYIGNYNVTSRQPNRGKILSYLFPKEN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2415 490 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 480 - -
Aed4g2415 490 Gene3D - 6 85 IPR012677 -
Aed4g2415 490 MobiDBLite consensus disorder prediction 78 105 - -
Aed4g2415 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Aed4g2415 490 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Aed4g2415 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aed4g2415 490 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aed4g2415 490 SMART rrm1_1 107 179 IPR000504 GO:0003723
Aed4g2415 490 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Aed4g2415 490 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Aed4g2415 490 Gene3D - 86 194 IPR012677 -
Aed4g2415 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Aed4g2415 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Aed4g2415 490 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Aed4g2415 490 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2415 Aed-Chr4 26387918 26390983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2415 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.592 2.98e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2415 K14411 - gmx:100805131 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2415 4 26387918 26390983 Aed4g2415 4 26387918 26390983 ECH
Aed4g2415 4 26387918 26390983 Aed3g2563 3 27818351 27821031 PCT