Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2414 ATGATGCCTTGTGCTAAGCCTGAAGACTCAGAGCCATTTGTTGAAATTGATCCAACTAGAAGATATGGCAGATACAGTGAGCTACTGGGATGTGGTGCTGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAGGGAATAGAGGTGGCTTGGAACCAAGTGAAGCTGAGGAACTTCAGTGATGATCCTTCCATGGTGGATAGGCTTTACTCTGAAGTGAGGTTGCTCAGAAGCTTGACCAACAAGAACATAATTTCACTATACAGTGTTTGGAGGGATGAGAAGCACAACACCTTGAACTTCATCACTGAGGTCTGCACCAGTGGGAATCTGAGGGAGTACAGGAAGAAGCACAGGCATGTGTCCATGAAGGCCTTGAAAAAGTGGTCCAAGCAGATCTTGGAAGGCTTGAATTACTTGCATCAGCATGATCCTTGTATCATCCACAGAGACCTCAACTGCAGTAATGTGTTTGTCAATGGGAATACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGGAAGAGCCACTCTGCACATTCAATTCTCGGGACACCAGAATTTATGGCACCTGAGTTATATGATGAGGACTACACTGAAATGGTTGACATATACTCATTTGGAATGTGTGTGTTAGAGATGGTGACACTAGAGATTCCATATAGTGAGTGTGACAATGTTGCAAAGATATACAAGAAGGTGTCATCTGGTGTGAGACCACAGGCCTTGAACATGATCAAAGATTCTGAGGTTAAGGCTTTCATTGAGAGGTGCCTTGCTCAACCAAGGGCTAGACCTTCTGCTGCTGAGTTGCTTGAGGACCCTTTCTTTGATGTGCTTGATTATGACGAAAATGATGACTCCAATGCTTCATGA 888 0.4437 MMPCAKPEDSEPFVEIDPTRRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFSDDPSMVDRLYSEVRLLRSLTNKNIISLYSVWRDEKHNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSKQILEGLNYLHQHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKSHSAHSILGTPEFMAPELYDEDYTEMVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPQALNMIKDSEVKAFIERCLAQPRARPSAAELLEDPFFDVLDYDENDDSNAS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2414 295 Gene3D Phosphorylase Kinase; domain 1 7 104 - -
Aed4g2414 295 CDD STKc_WNK 21 281 - -
Aed4g2414 295 PIRSF TyrPK_CSF1-R 21 125 - -
Aed4g2414 295 PIRSF TyrPK_CSF1-R 77 278 - -
Aed4g2414 295 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 293 - -
Aed4g2414 295 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2414 295 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 293 - -
Aed4g2414 295 Gene3D Transferase(Phosphotransferase) domain 1 106 285 - -
Aed4g2414 295 SUPERFAMILY Protein kinase-like (PK-like) 16 282 IPR011009 -
Aed4g2414 295 Pfam Protein kinase domain 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2414 Aed-Chr4 26377943 26380024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2414 1 282 MAP Kinase Kinase Kinase AT5G55560 80.690 0.0 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Aed4g2414 Pkinase 1.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2414 K08867 - gmx:100818126 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2414 4 26377943 26380024 Aed4g2414 4 26377943 26380024 ECH
Aed4g2414 4 26377943 26380024 Aed3g2565 3 27828190 27831131 PCT