Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2412 ATGGACGCCGCCGAAGCTCCCTCCGACGATCCGAATCGCCCCAATTCCGCCGCAGATGCTGCTCCGGCCACCGCAGGCGCCAGGTACAAGCTCATGTCGCCAGCTAAGCTCCCGATCTCGCGCTCGCCGTGCGTCACCATTCCGCCGGGGCTCAGCCCGTCCTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTTGAACCTTCACCTACTACAGGATCCCTTTCTTTGCTTCATCAAACAGCATATGGTTCTGTGACTTCTGCTGCTGCATCTACTACATTTCCTGTAACCACTGTATGCTTCAATACCAATACTGTTGATGACAGAAAACCCAGCTTCTTTGAGTTTAAACCGCACAGTAGATCAAATATGGTTCCTGCAGACTCTGACAACCATGCAAGTGAAAAATCTACTCAAGTAGATGGTCAAGGAAAAGCTCAAGCTTTTGACTCATCACTGTTAGTAAAAAATGAGTTAGCAGTCTCTTCAAATGAATTAGGTCTATCATCACCTGTTCAAATGGATAGCTCAGGAGCTAGTGCCCGTGTTGAAGGTGATTTGGATGAAGTGAACCTTAGGAGCAACATAACAACTGGGCTTCAAGCATCAAAAGTTGACAATAGAGGTAGTGGACTTTCCGTTGCTGCTGAGAGAGTATCTGATGATGGCTACAACTGGAGAAAATATGGGCAAAAACATGTTAAAGGAAGTGAATTTCCGCGCAGTTATTACAAATGTACACATCCTAACTGTGAGGTTAAGAAACTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGATCGCATGATCATCCTAAACCTCAACCAAACCGACGTTACTCTGCTGGAGCTATGATGTCTATGCAAGAAGAGAGATCTGATAAAGCTTCTTTGACTAGCCGAGATGACAAAGGATCCAATATATGTGGCCAGGGGTCTCATCTGGCTGAGCCTGACAGTACACCAGAGCTATCGCCTGTAGCAACAAATGATGGTGATCTAGATGGTTCGGGGGTTTTGCCAAACCAGAATAATGATGAGGTTGATGATGATGATCCCTTCTCAAAGCGAAGGTTTGACAATTTCTCCCAAAGCTCTAAGTTTCTTTCTGCTGCTTATTCTTTTGCTTACTGTAAAGAAGGGCTAGACAACCTCCAACCTCATGTTCTGCCAGTTTTGGCGATGAGTTATTACAAATGCACGAACACCGGTTGCCCTGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCAAAAGCTGTGATTACCACATATGAGGGGAAGCACAATCATGATGTACCAATTGCAAGGAATAGTTGCCATGACATGGCAGGACCAGCAAGTGCAAGTGGACAGACAAGAATTAGGCCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGGATGGGAATTAGCCCAACTACTGAAAACACACTGAACAGTCAAGGGAGAATGATGCTTTCTGGATTTGGGGATAGTCAAACTCACATCAGCAATTCCAATTTCAAGTTTGTTCATACTGCAACGGTGCCGGGGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGTTCAAAAGAAAATTCAAGTGATGGTCCATCTTTAAACCGTTCTGCTTATCCTTGTCCTCAGAACATGGGGAGAATACTAATGGGTCCTTAA 1689 0.4523 MDAAEAPSDDPNRPNSAADAAPATAGARYKLMSPAKLPISRSPCVTIPPGLSPSSFLESPVLLSNMKVEPSPTTGSLSLLHQTAYGSVTSAAASTTFPVTTVCFNTNTVDDRKPSFFEFKPHSRSNMVPADSDNHASEKSTQVDGQGKAQAFDSSLLVKNELAVSSNELGLSSPVQMDSSGASARVEGDLDEVNLRSNITTGLQASKVDNRGSGLSVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGSHDHPKPQPNRRYSAGAMMSMQEERSDKASLTSRDDKGSNICGQGSHLAEPDSTPELSPVATNDGDLDGSGVLPNQNNDEVDDDDPFSKRRFDNFSQSSKFLSAAYSFAYCKEGLDNLQPHVLPVLAMSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPIARNSCHDMAGPASASGQTRIRPEESDTISLDLGMGISPTTENTLNSQGRMMLSGFGDSQTHISNSNFKFVHTATVPGYFGVLNNNSNPYGSKENSSDGPSLNRSAYPCPQNMGRILMGP 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2412 562 MobiDBLite consensus disorder prediction 127 147 - -
Aed4g2412 562 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2412 562 Pfam WRKY DNA -binding domain 403 439 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2412 562 Gene3D WRKY domain 215 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed4g2412 562 Gene3D WRKY domain 387 443 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed4g2412 562 SUPERFAMILY WRKY DNA-binding domain 403 442 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed4g2412 562 SUPERFAMILY WRKY DNA-binding domain 220 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed4g2412 562 ProSiteProfiles WRKY domain profile. 218 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2412 562 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 404 542 IPR044810 GO:0003700
Aed4g2412 562 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 367 IPR044810 GO:0003700
Aed4g2412 562 MobiDBLite consensus disorder prediction 1 23 - -
Aed4g2412 562 MobiDBLite consensus disorder prediction 532 550 - -
Aed4g2412 562 MobiDBLite consensus disorder prediction 293 365 - -
Aed4g2412 562 SMART WRKY_cls 387 441 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2412 562 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2412 562 MobiDBLite consensus disorder prediction 532 553 - -
Aed4g2412 562 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 404 542 - -
Aed4g2412 562 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 14 367 - -
Aed4g2412 562 MobiDBLite consensus disorder prediction 118 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2412 Aed-Chr4 26356684 26362124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2412 32 562 WRKY Transcription Factor Family AT4G26640 47.594 3.06e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed4g2412 WRKY 2.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2412 - - gmx:100781491 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2412 4 26356684 26362124 Aed4g2412 4 26356684 26362124 ECH
Aed4g2412 4 26356684 26362124 Aed3g2568 3 27840832 27846546 PCT