Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2410 ATGGATATTTCGGAGTACACAAGGATTGTTTTTGACAAAGTTCAGAGATTTGAGCCTGAGCATGCTACAAAGATCATAGGGTATCTCCTTCTCCAAGACCATGGTGAGCAAGACATGGTGAAATTGGCTTCACTCCCAGACCAGTTAATTCGCGAGGTGGCGTTCAAGGCAAGAACCCAGCTTCAAAGGTATGCTGCTAGATCAGCCATTCAGCCAATTTCACTTCCCATCAACTGTCAACAAAGTTTGAATCATTTGTCAGTAATCTCCCCCACTTCAGTGATCACCCCTGGCACTCCTACTTCACCCTTCCTGGTACAATCTCCCTATTGGGATCCTCAGTCTGCTAATAATACCAATGCTGCAGAATTCATGTCAGTTGGTTATTTGGATTCTATATCAGAACTTCAAAAGCAGACCTCTTTGTTCAGTTTAGAAAATAATAATAATAATAATATAGATACTATGAATTCTGGGACTGCTAATGATTACTATGGCTTAGATGCTTCATCAGCTGGTAATAATATGAATGGAAAAACTGGTAGAAGGTTTGAATTTCCAATCAAGACCTGTCACTATTTCAACAAAGGGTTTTGTAAGCATGGAAATAGCTGTAGATACTATCATGGCCAAGGTGTCCCTGATATATTCTCTCACATGTATGGAAATGATACTTTTAATGATGATCAGGTGATTTCACCTGGGTCACTAGCACAATTAGAGTCAGAAATTGTTGAACTCCTGAAACTAAAAAAAGGAGGTTCTATCTCAATTGCTTCCCTTCCAATGGCATACTATGACAAGTACAAAAAAGTGCTGCAAGCCGATGGCTACCTGACCGAGAGCCAGAGACATGGTAAGTCTGGCTACAGCTTGACTAAGCTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATTCGGTTGTTCTGGCAGAAGATGCTCCAAAGTTCAATGGAAAGGTAGATTATGGTAAATACATTAGTGCATCACGGCAAATATACCTGACATTTCCGGCTGACAGCACTTTTACTGAGGGTGATGTTTCAAACTACTTTAGGAAGCACTCAGATAGAGTCGATCACTCTGCTTATTATTCACCAAACTATGTAGACATTGACACTGAACCTACCTCAATTCCAAGAAGTTGCAGGAACCCTCGATTTCTCAGGAGGCTGCTCATTGAACAGCAAGACGAGGCTGCCCTTGAATTTCAGAGACGACGCTTTGCAGAGCTACAACTGGTCCAAAAATCTTTGTCCACTTCACCCCGTTTAGGCTTCAACATGGACAGGCTAAAAGTTCCAGATGATCATTTCAATGTCCACTTTGCAGAATCTCACAGTCATGCTCCGAATGACAAAACCGGGTACACAGATAACAATTACACTGATGAGGACAGCAATCAAGGACTGAATCTCCCAGACAGCCCATTTGCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATATAG 1494 0.417 MDISEYTRIVFDKVQRFEPEHATKIIGYLLLQDHGEQDMVKLASLPDQLIREVAFKARTQLQRYAARSAIQPISLPINCQQSLNHLSVISPTSVITPGTPTSPFLVQSPYWDPQSANNTNAAEFMSVGYLDSISELQKQTSLFSLENNNNNNIDTMNSGTANDYYGLDASSAGNNMNGKTGRRFEFPIKTCHYFNKGFCKHGNSCRYYHGQGVPDIFSHMYGNDTFNDDQVISPGSLAQLESEIVELLKLKKGGSISIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKVDYGKYISASRQIYLTFPADSTFTEGDVSNYFRKHSDRVDHSAYYSPNYVDIDTEPTSIPRSCRNPRFLRRLLIEQQDEAALEFQRRRFAELQLVQKSLSTSPRLGFNMDRLKVPDDHFNVHFAESHSHAPNDKTGYTDNNYTDEDSNQGLNLPDSPFAFPVDSGISAVI 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2410 497 ProSiteProfiles Zinc finger C3H1-type profile. 185 212 IPR000571 GO:0046872
Aed4g2410 497 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 360 497 - -
Aed4g2410 497 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 361 - -
Aed4g2410 497 MobiDBLite consensus disorder prediction 451 483 - -
Aed4g2410 497 Pfam OST-HTH/LOTUS domain 236 315 IPR025605 -
Aed4g2410 497 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 361 - -
Aed4g2410 497 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 360 497 - -
Aed4g2410 497 MobiDBLite consensus disorder prediction 458 481 - -
Aed4g2410 497 ProSiteProfiles OST-type HTH domain profile. 236 319 IPR025605 -
Aed4g2410 497 Gene3D - 185 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2410 Aed-Chr4 26332222 26336692 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed4g2410 OST-HTH 1.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2410 - - gmx:100806206 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2410 4 26332222 26336692 Aed4g2410 4 26332222 26336692 ECH
Aed4g2410 4 26332222 26336692 Aed3g2573 3 27861288 27867305 PCT