Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2407 ATGTTCTTTCTCTTCTATCACTACTCTTCTTCCATGATGCACCATGCAACTGATTTTCTCCTCCAACCCGTTTTCACACGTGGGGTATCTGCTTCACTCCATCTAGTCCTGTTACTTGTGCTTCTTTTGTCTTGGCTATGGAAGAAAGTGCAAGTGGTACATAGAGAAAAGAGTGAGAGACATGGTTTCCATAATACTGGTTTCTTCTACTACAAACACAGTCTGGTTTGTAGCTTAGTTATTTGTGTCTTCAACCTTGTGTTGTGCTTACTAAGTTACTTTTACTTGTATAAACATGATGGTTCAGAGGAGCGTGTCACACTTTCTGATTTGGCCCTCAAAACTGTTGTTTGGGGTGCTGTTTGTGCTTATTTACATTCTACAAACTCCGAGGCACAGGATCGGAGTTTCCCAAGTTTGTTGAGAATTTGGTGGTTTGTCTATGCCTTCGTTTCTTGTTCTTGCCTCGTTATTGACTTTGTAGTCTATGGAAAGCATGTTTTCTTGCCAATTATATACCTTGTTTCTGATATAGGTTCCTCTATTACGGGTTTATTTCTATGTACTGTTGGATGTTCTGTTAACAATATGGCTAAGCTTGCCCCTCTTGAAGAGGCCCTTTTGAATGGTGACTCTAGTGTCAGCAAGACTAGAGGAAATGAAAATTTAACCCGGTATTCAAATGCTGGATTTTTCAGCATTCTCACTTTCTCATGGATCAGTCCACTAATAACTCTGGGAAATGAGAAGACTTTAGACCATGAGGACCTCCCACTTCTTGGTACTGATGACAGTGCCTATGGGGTTTTTCCAACTTTTAAAAACAAACTTGAGTCAGAGTGTGGTAGTGTTAGGAATATGACCACTCTTAAGCTGGCGAAGGTGTTATTCTTGTCCACATGGCAGGGAATCCTTTTGTCAGGTTTATTTGCATTTCTATACACATGTTCTTCTTATGTTGGACCCTTTCTTATTGCCATCTTTGTTCAATACCTCAATGGGGATCACAAGTTTAAAAATGAAGGCTATGTTTTGGCTATGGCATTTGTTGCTGCAAAGCTTGTGGCGTGTCTTTCACAGAGGCACTGGATGTTTAGGTTCCAGCAGGTTGGGATTAGGATGCAATCAAAGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTCTCATGTAAATCACAGGAGGTTCGTAGCACTGGGGAAATCATCAACTTAATGACTGTTGATGCTGAAAGGATTGGTGAATTTTGTTGGTACATGCATGATCCATGGATGTGTGTTTTGCAAGTTACTTTGGCTTTGTTAATTCTCTATAGAAGTGTAGGGGTTGCTTCAATAGCTGCTCTTGCTGCCACTATAATTGTTATGTTGCTAAACCTTCCTCTGGCATCATTGCAAGAAAAATTCCAAGGCAAGATAATGGAGTTCAAAGATAGGAGAATGAAGGCTACGTCTGAGATTCTGAACAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAATTCTTATCAAAGATTACTCAGCTTAGGAAGACTGAGGAGACATGGCTAAAGAAATTTCTAGTTGGTACAGCAATTATTACATTTCTCTTCAATAACTCCCCAACTGTTATTGCTGTGGTTACATTCGGTGCTTGTGTTCTAATGGGAATCCCACTTGAATCAGGAAAGGTATTATCTGCACTTGCAACATTTAGAATTCTTCAAATGCCCATCTACAGTCTTCCCGACACGATTTCAATGATTGCACAAACTAAAGTTTCCCTTGATAGGATTGCATCATTTCTTCATCTAGACGAGTTGCAGACTGATGTTATAGAGAAGCTCCCTTGGGGTAGTTCTGATAAGGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGATTTATCTTCCCCTAACACAACATTGAAAAACATCAATCTCACAGTTTTTCATGATATGAGAGTTGCTATATGTGGAACTGTTGGATCAGGCAAGTCTAGTTTGCTTTCTTGTATAATAGGGGAAGTACCAAAGATATCTGGGACACTGAAGATATGTGGAACAAAGGCTTATGTTTCTCAATCACCATGGATACAAGGTGGCACGATAGAAGAAAACATATTATTTGGTAAAGAGATGGACAGGGAAAAATATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTTGGTGACAAGACCATTATTGGAGAGAAAGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCTCGTGCTCTATACCAAGATGCTGATATATATCTGTTTGATGATCCATTCAGTGCCGTAGATGCTCATACAGGATCTCATCTCTTTAAGGAGTGCTTGCTTGGCCTTTTAAAATCAAAAACTGTGATATATATAACTCATCAAGTAGAGTTCTTACCCGATGCTGATCTAATATTGGTAATGAGAGAAGGAAGAATAACTCAATCAGGAAAATACAATGACATTCTCAAGTCAGGCACTGATTTTATGGAACTTGTAGGTGCACACAAAGCAGCTTTGTCAATCAAGTCCTTAGAGAGAAGACCAACATTTAAAACATCAAGTATCACCAAGGAGGACACAAATTCAGTAAGTGATTTTGAACTTGAGCAAAATGTGGAAAACAACATATATGATCAAAATGATAAGTCAGATGACACAGTTGAGCCTAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAATGTCTACTGGAAATACCTCACAACAGCTTATGGAGGAGCTCTTGTACCCTTCATATTACTTTCGACAATACTCAATGTGGCTTTTCAGATTGCTAGCAATTATTGGATGACTGTGGCAACTCCTGTTTCAGCAACTACAGAACCTGATATTGGAAGCCTTACACTTATGGTTGTTTATGTTGCTTTGGCAATTGGAAGTTCCATTTTCACCTTTGCCAGAGCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCACTGTGCTCTTCAATAAAATGCATTTCTGCATTTTTCAAGCACCAATATCATTTTTTGATGCCACCCCGAGTGGGCGAATCCTTAATAGAGCATCAACAGACCAAAGTGCACTAGATATGCGCATTCCAAATCTAGTATGGGGAATTGCCTTCAATCTGGTTCAACTCTTGGGAAATATTGTTGTGATGTCTCAAGCTGCATGGCAAGTCTTTATAGTATTGATTCCAATCATGGCAGCATGCATATGGTACCAGCGATACTATTCTGCATCAGCAAGGGAATTGGCACGATTAGTTGGCACATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGACATAAATATGAAATTGATAGACAGATATTCCCAACCAAAACTATACAGTGCTACTGCAATGGAATGGCTGAATTTCAGATTGGATATCTTATCTACTCTCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAATTCAATGACTGCTCCAAGCATCGCGGGATTGGCAGTGACGTATGGACTTAATCTAAACACCCTACAATTTTATATAATCTGGTTCCTTTGCAATTTGGAGAACAAAATTATATCTGTTGAAAGAGTATTCCAGTACACATCCCTTCCAAGCGAAGCTCCTCTTGTGATAAAAGATAACCAACCAGATTATTCTTGGCCAACATTTGGAGAGGTTCATATCTGGGATTTACAGGTTCGATATGCTTCTCACTTGCCTATTGTTTTACGAGGTCTTACTTGCACTTTCACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACTCTAGTGCAGACACTTTTCCGACTTATTGAACCTGTTTCTGGAAAAATATTGATAGATAGCATTAACATCTCTTTGATTGGAATTCACGATTTGCGGTCCAGACTAAGCATTATTCCTCAAGATCCAACAATGTTTCAAGGGACTGTAAGAACCAACCTGGACCCACTTGAAGAGTACACAGATCAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAAAAAGAAGGGAAGCTTGACTCCATAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAATTGGTCTGCCTTGGCCGTGTTCTACTAAAGAAAAGTAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACAGATAATACTATTCAGCAAACAGTTAAGCAACATTTTTCAGAATGCACAGTTATTACCATTGCTCATAGGATAACTTCAATCCTTGACAGTGACATGGTTCTGTTTTTAAATCAAGGGTTGATTGAGGAATACGATTCACCAAAGAAGCTGCTTAAGAACAAGTCTTCATCTCTAGCTCAACTAGTTGCAGAATACACATGGAGGTCAAACTCTGGTTTTGGAAATTAA 4488 0.3922 MFFLFYHYSSSMMHHATDFLLQPVFTRGVSASLHLVLLLVLLLSWLWKKVQVVHREKSERHGFHNTGFFYYKHSLVCSLVICVFNLVLCLLSYFYLYKHDGSEERVTLSDLALKTVVWGAVCAYLHSTNSEAQDRSFPSLLRIWWFVYAFVSCSCLVIDFVVYGKHVFLPIIYLVSDIGSSITGLFLCTVGCSVNNMAKLAPLEEALLNGDSSVSKTRGNENLTRYSNAGFFSILTFSWISPLITLGNEKTLDHEDLPLLGTDDSAYGVFPTFKNKLESECGSVRNMTTLKLAKVLFLSTWQGILLSGLFAFLYTCSSYVGPFLIAIFVQYLNGDHKFKNEGYVLAMAFVAAKLVACLSQRHWMFRFQQVGIRMQSKLVAMIYAKGLTLSCKSQEVRSTGEIINLMTVDAERIGEFCWYMHDPWMCVLQVTLALLILYRSVGVASIAALAATIIVMLLNLPLASLQEKFQGKIMEFKDRRMKATSEILNNMRILKLQAWEMKFLSKITQLRKTEETWLKKFLVGTAIITFLFNNSPTVIAVVTFGACVLMGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKVSLDRIASFLHLDELQTDVIEKLPWGSSDKAIELVDGNFSWDLSSPNTTLKNINLTVFHDMRVAICGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQGGTIEENILFGKEMDREKYEKVLEACSLTKDLEVLPFGDKTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKSKTVIYITHQVEFLPDADLILVMREGRITQSGKYNDILKSGTDFMELVGAHKAALSIKSLERRPTFKTSSITKEDTNSVSDFELEQNVENNIYDQNDKSDDTVEPKGQLVQEEEREKGRVGFNVYWKYLTTAYGGALVPFILLSTILNVAFQIASNYWMTVATPVSATTEPDIGSLTLMVVYVALAIGSSIFTFARAFLAVIAGYKTATVLFNKMHFCIFQAPISFFDATPSGRILNRASTDQSALDMRIPNLVWGIAFNLVQLLGNIVVMSQAAWQVFIVLIPIMAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINMKLIDRYSQPKLYSATAMEWLNFRLDILSTLTFAFCLVFLISFPNSMTAPSIAGLAVTYGLNLNTLQFYIIWFLCNLENKIISVERVFQYTSLPSEAPLVIKDNQPDYSWPTFGEVHIWDLQVRYASHLPIVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQTLFRLIEPVSGKILIDSINISLIGIHDLRSRLSIIPQDPTMFQGTVRTNLDPLEEYTDQQIWEALDMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNTIQQTVKQHFSECTVITIAHRITSILDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVAEYTWRSNSGFGN 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2407 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 932 1212 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed4g2407 1495 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 201 1495 - -
Aed4g2407 1495 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524
Aed4g2407 1495 Pfam ABC transporter transmembrane region 305 572 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed4g2407 1495 Pfam ABC transporter transmembrane region 932 1175 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed4g2407 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 841 IPR027417 -
Aed4g2407 1495 CDD ABCC_MRP_domain1 619 819 - -
Aed4g2407 1495 Pfam ABC transporter 1267 1414 IPR003439 GO:0005524
Aed4g2407 1495 CDD ABC_6TM_ABCC_D2 930 1224 IPR044726 GO:0140359
Aed4g2407 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 619 842 IPR003439 GO:0005524
Aed4g2407 1495 Gene3D - 602 863 IPR027417 -
Aed4g2407 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1239 1475 IPR027417 -
Aed4g2407 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 305 585 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed4g2407 1495 CDD ABCC_MRP_domain2 1247 1467 - -
Aed4g2407 1495 Gene3D - 1232 1485 IPR027417 -
Aed4g2407 1495 CDD ABC_6TM_ABCC_D1 306 593 IPR044746 GO:0140359
Aed4g2407 1495 SUPERFAMILY ABC transporter transmembrane region 301 600 IPR036640 GO:0005524|GO:0016021
Aed4g2407 1495 Pfam ABC transporter 637 771 IPR003439 GO:0005524
Aed4g2407 1495 Gene3D ABC transporter type 1, transmembrane domain 894 1230 IPR036640 GO:0005524|GO:0016021
Aed4g2407 1495 Gene3D ABC transporter type 1, transmembrane domain 275 601 IPR036640 GO:0005524|GO:0016021
Aed4g2407 1495 SUPERFAMILY ABC transporter transmembrane region 930 1231 IPR036640 GO:0005524|GO:0016021
Aed4g2407 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1249 1483 IPR003439 GO:0005524
Aed4g2407 1495 SMART AAA_5 646 819 IPR003593 -
Aed4g2407 1495 SMART AAA_5 1275 1460 IPR003593 -
Aed4g2407 1495 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 201 1495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2407 Aed-Chr4 26312220 26318213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2407 619 864 Calmodulin-binding Proteins AT2G36910 29.213 2.24e-25 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2407 4 26312220 26318213 Aed4g2407 4 26312220 26318213 ECH
Aed3g2576 3 27882733 27889126 Aed4g2407 4 26312220 26318213 PCT