Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2394 ATGGCGGTTTGTTCTCTGTCTGTTACCCCTCTTTCTCTCTCGAATTCTTCCCCTTCTCTATCTTCGAAGCCAAAGTCTCCATCTTTGTGCTTTCTCTCTGGTAGGGTCACATGCCCAAAGCCTCTGCACTCATCTACTGTGGTTCATGTTGCTCCAGAAGCGTTGGATTCTTCACCTGATCCCTTAGACCCACCTCCAGAAACCCTTGATGATGATGACTCTGACGCCACCACTTTTCAGGTTGGTGACTTGGGGACTCCGAGCACTTCGGCAATTAGCATTGGTGCTGATGCAGATACAATGGCACCAAAGCAGAAGATTAGAATCAAACTTAGATCTTACTGGGTGCCCTTGATAGAGGATTCCTGCAAGCAGATATTAGATGCAGCAAGGAATACCAATGCGAAAACGATGGGACCTGTGCCATTACCAACCAAGAAGCGAATCTACTGTGTTCTTAAATCCCCACACGTACACAAGGATGCTCGGTTCCATTTTGAGATCAGAACTCACCAGCGTCTCATTGATATTCTATATCCTACAGCTCAAACAATAGATTCTCTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTAG 612 0.4641 MAVCSLSVTPLSLSNSSPSLSSKPKSPSLCFLSGRVTCPKPLHSSTVVHVAPEALDSSPDPLDPPPETLDDDDSDATTFQVGDLGTPSTSAISIGADADTMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2394 203 PRINTS Ribosomal protein S10 family signature 162 176 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g2394 203 PRINTS Ribosomal protein S10 family signature 106 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g2394 203 PRINTS Ribosomal protein S10 family signature 141 156 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g2394 203 MobiDBLite consensus disorder prediction 52 85 - -
Aed4g2394 203 TIGRFAM rpsJ_bact: ribosomal protein uS10 105 202 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g2394 203 MobiDBLite consensus disorder prediction 1 26 - -
Aed4g2394 203 ProSitePatterns Ribosomal protein S10 signature. 130 145 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed4g2394 203 Hamap 30S ribosomal protein S10 [rpsJ]. 104 203 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aed4g2394 203 SMART Ribosomal_S10_2 108 202 IPR027486 -
Aed4g2394 203 SUPERFAMILY Ribosomal protein S10 106 203 IPR036838 -
Aed4g2394 203 Gene3D Ribosomal protein S10 domain 95 203 IPR036838 -
Aed4g2394 203 Pfam Ribosomal protein S10p/S20e 108 202 IPR027486 -
Aed4g2394 203 PANTHER BNAC05G40270D PROTEIN 57 203 - -
Aed4g2394 203 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 57 203 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2394 105 203 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.000 8.82e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2394 K02946 - gmx:100306286 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2394 4 26243935 26246661 Aed4g2394 4 26243935 26246661 ECH