Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2374 ATGGCGGACTCCGACAACGACTCCGGCGGCACGCACAACGCTGGCAAGGGCAGCGAGATGTCGCCGCGAGAGCAGGACCGGTTTCTGCCGATCGCGAACGTGAGCCGCATCATGAAGAAGGCTCTCCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACGATCAACGGCGACGACCTGCTCTGGGCGATGACCACTCTCGGATTCGAGGACTACGTGGAGCCTCTCAAGGGCTACCTCCAGCGCTTCAGAGAAATGGAAGGAGAGAAGACCGTGGCGGCGCGTGATAAGGACGCGCCTCCTCCTTCCAATGCTACCAACAGTGCCTACGAGAGTGGTAGTTATGCTAATGCTGGTGGAATGATGATGCATCAGGGACACGTGTACGGCTCTGCCGGGTTCCATCAGGTGGCTGGCAGTGCTGCTTATCCCGGGCCTGGATCCAATGCGGGTAGGCCCAGATAG 549 0.6066 MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQRFREMEGEKTVAARDKDAPPPSNATNSAYESGSYANAGGMMMHQGHVYGSAGFHQVAGSAAYPGPGSNAGRPR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2374 182 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed4g2374 182 SUPERFAMILY Histone-fold 25 134 IPR009072 GO:0046982
Aed4g2374 182 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 157 - -
Aed4g2374 182 MobiDBLite consensus disorder prediction 119 142 - -
Aed4g2374 182 MobiDBLite consensus disorder prediction 1 15 - -
Aed4g2374 182 MobiDBLite consensus disorder prediction 1 26 - -
Aed4g2374 182 Gene3D Histone, subunit A 16 145 IPR009072 GO:0046982
Aed4g2374 182 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Aed4g2374 182 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Aed4g2374 182 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Aed4g2374 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Aed4g2374 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2374 Aed-Chr4 26102027 26102575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2374 1 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.885 9.34e-74 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed4g2374 CBFD_NFYB_HMF 1.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2374 K08065 - gmx:100813580 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2374 4 26102027 26102575 Aed4g2374 4 26102027 26102575 ECH