Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2348 ATGGATGCTAAGTCAGCTGTAGAATTAATGGAGTCTTCCTCGGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCATAGAACAACCAACAACTTCAGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACGACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACAATAACTTGACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGATGCATTTGATATTGAGCAATTGCTATGTGTTATGGACAAGTTGAAGCATGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAAAGTTACAAGAGTGATGATGTGTTAAGAAGGGTGAACCCTTCGGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTCCGGGAATTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGACACTACCGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGTGATAATCATGTGGCCATTGATTTGATTGTACAACATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCGAATTTGTACGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCCCAGACAACCAAGCATGATTTTATATTTTATTCTGATCGTTTGATTCGATTGGTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTTGATTTTCGTAAAAGGCTGTGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATACGAAAAGTTGCCAAATGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTCTACTCATCAAAAAGGGTGTGCCCGAGTCCAACATTATATTTCTTAATCTCATATCTGCGCCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAAATAGTAACGTCTGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCCGGCATGGGTGAGTTCGGAGATCGGTATTTCGGAACAGATGATGACGATGAGCAAGTGTTGCTTTCTTCCCAATAG 1434 0.401 MDAKSAVELMESSSEVHFSGFHMDGFEQRKASIEQPTTSETDMYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYNNLTEEELTRVQDYNFDHPDAFDIEQLLCVMDKLKHGEAVDIPKYDFKSYKSDDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTTEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFRKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEQVLLSSQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2348 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 239 IPR027417 -
Aed4g2348 477 TIGRFAM udk: uridine kinase 46 246 IPR000764 -
Aed4g2348 477 PRINTS Uridine kinase signature 77 88 - -
Aed4g2348 477 PRINTS Uridine kinase signature 214 227 - -
Aed4g2348 477 PRINTS Uridine kinase signature 47 64 - -
Aed4g2348 477 PRINTS Uridine kinase signature 122 137 - -
Aed4g2348 477 PRINTS Uridine kinase signature 178 188 - -
Aed4g2348 477 PRINTS Uridine kinase signature 192 203 - -
Aed4g2348 477 PANTHER URIDINE KINASE 15 468 - -
Aed4g2348 477 Pfam Phosphoribulokinase / Uridine kinase family 49 234 IPR006083 GO:0005524|GO:0016301
Aed4g2348 477 PANTHER URIDINE KINASE 15 468 - -
Aed4g2348 477 Gene3D - 250 465 IPR029057 -
Aed4g2348 477 Gene3D - 43 249 IPR027417 -
Aed4g2348 477 Pfam Uracil phosphoribosyltransferase 264 465 - -
Aed4g2348 477 SUPERFAMILY PRTase-like 249 466 IPR029057 -
Aed4g2348 477 CDD PRTases_typeI 323 438 IPR000836 -
Aed4g2348 477 CDD UMPK 49 246 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2348 Aed-Chr4 25896006 25903560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2348 1 468 PRT Gene Family AT4G26510 83.404 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2348 K00876 - gmx:100792258 931.013