LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g2347	ATGCCACAAGAGAGCTCTCAACACTCATTTTTCACATCTCCTTCAAAGAGAGGATTGAAGGGTTTGGTGTCCATTAACAAGGAGGCTTCATGCACTGCTGCTGCTACAGAGGAGAGTTTCAATGATCATGAATTGGCTCAGAGGAAGGCAGAGGAAGCAGGTTGGAGAAGATACAAAGCAACAGAATGGCTACGACAAATGGACCATGTTGCATCATCATCACTATCTCCAACACCCTCCGAAGAAGACTTTTGCCTTTCACTCCGCAATGGTCTCATTCTATGCAATGTCCTTAACAAAGTCAACCCCGGTGCTGTCCTTAAGGTGGTGGACAATCCTGGGCTGGCTGTTCAGTCTGCAGAGGGGGCGGCCCACTCAGCAATTCAGTATTTTGAGAACATGAGGAACTTTTTGGAGGCTGGAGGTTCATCAAATAAAGTTGTGGACTGCATTCTATGTTTAAAAGGGTTTTATGAATGGAGGTTATCTGGTGGAGTTGGTGTGTGGAGGTATGGTGGAACTGTGAGGATCACTTCCTTTCCAAAGAAGTCTCCTTCTTCCTCCATAGTTGGCAGTGAAAGTGCTGATGATTCAGTGGATGAGTCTGAGTCATCACAGTATGAACAGCTGCTAGAGTTTCTTCAACTATCTGAAGACTTCTTGATTGAAGAAACCAGAACTGCCAATGCTATTGCTTTCCTCTATGACCACTTTGGACTCAGGCTTCTTCAGGCTTATCTTAGAGAGGCCAATGGGATTGAAGATCTTCCTCTGAATGCAATGGTGATTGATACCTTACTCAGCAAGGTAGTCAAGGATTTCTCATCTTTGCTTGTTTCTCAAGGCAATCAGCTTGGACTTTTCCTGAAGAAAATACTAAAAGGTGATATTGGTTGTCTCTCAAAGAGAGAGTTCATAGAAGCCATCTCACTATATCTTAACCAAAGAACTAGTTTGGCATCAAATGATTTCTCCAAATTCTGCAACTGTGGTGGAAAGCGCGATAGCATTCGACAGAATGCCAATTATTCTGCAAAATATGCTGAAGTAATCAATACTCAACAGAAACAACTTGAGGGTATGAAGTACTTTTTTGAAGAGACAAAATTAGAGGTCAGACAAATTCAATCAGAGTGGGAAGAAGAATTTAGTAGGCTAGAGGATCATATCAAAAGCCTTGAAGTGGCCTCCTCTTCCTACCAGAGAGTTTTGGAGGAGAACCGCCTTCTTTACAATCAAGTACAAGACCTCAAAGGAGCCATTAGGGTCTATTGTAGAGTGAGACCATTCTTACCAGGACAATCAAATGGACCGTCTACTGTAGACTATATTGGAGAAAATGGAGACATGATGATTGTAAATCCCCTTAAGCATGGAAAAGATGCTAGAAGGGTTTTTTCATTCAATAAGGTGTTTGGAACAAGTGTAACACAAGAACAAATTTATGCTGACACTCAACCGTTGGTCAGATCTGTTTTAGATGGTTATAATGTATGTATCTTTGCATATGGACAGACTGGCTCAGGGAAAACATACACAATGAGTGGCCCTGATCTGACAACTGAAGAGACATGGGGTGTAAACTATAGGGCTTTGGGTGACTTATTTCATATATCAAAGGAAAGGTCAGATTCCATAAAATATGAAGTTTTTGTTCAGATGATTGAAATCTACAATGAACAAGTGAGAGACTTATTAGTCAGTGATGGCTCTAGCAGAAGATATCCTTTAAGCAATGCTTATATCTTGATTCTTTATCATTCCTTAACAAGATATACATTAGACATACGAAACACTTCTCAATTGAATGGCCTCAATGTGCCTGATGCATTTTTAGTTCCAGTTACTTGTACTCAAGATGTTCTAGACTTGATGAGAATTGGTCAGAGGAACCGTGCCGTTGGTGCAACAGCTCTAAATGAGAGAAGCAGTCGTTCTCATAGTGTTTTGACTGTTCATGTTAGAGGAAGGGAGTTAGTTTCCAACTCCATTCTTAGAGGTTGTCTCCATCTTGTGGATTTGGCTGGAAGTGAGAGGGTTGACAAATCTGAGGCTGTTGGTGAGAGACTAAAGGAGGCTCAACATATAAACAGATCACTTTCTGCACTTGGGGATGTTATCTCTGCCTTGGCACAGAAAAGTCCACATATCCCTTATAGGAATAGCAAACTTACACAAGTGTTACAAGATTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATAAATCCTGAACTTAATGCTATTGGGGAGACAATTAGCACACTCAAGTTTGCAGAGAGGGTTGCGTCCATTGAACTTGGAGCTGCTCAATCTAACAAAGAAACCGGTGAAATCCGAGATCTAAAGGAAGAGATATCAAGTCTCAAATTAGCATTGGAGAAGAAGGAGGCTGAATTGGAGCAATGGAAGACTGGGAATGCTCGAAACACTGTTGATTCTCAAAAACCAAGAGCTGTTTCACCTTTTCAATTACCAAAATATGGTACCAGTGGCAACATGAAGCATGAAACTGGTCAAAGACTCATGGATGATAGAGGTTTTGAGTCTAGAAGTTGCTCTTCTGGTAAGCAAAGAAGGTCAAGATTTCCCTCAGCATTTATAGAAAAGGACTCCATGCCAAAAATGTCTCTTCTGACTGAAGAAAAGTTAGTGAGCTCTGGCATGGGAAGATCACCATCCCCTCCAGTGAGAAGATCACTATCCAATGATAGAGGGTCAGTCATTAAAAGCAAAGTCAAAACTGAAACAGTAGAAAACCAACCAATATTAAAGCATCCATTTCCAGCTAGAGTACCTGCTAACAAGTCCCTTGTCACAATGCCAGTGCCTGCATCCACTGACAACTACACAAGAATGTATGTGAATTCACAAGAGCCAGTAAAGCAGGAAAACATTTCTGAAACACTCTTCAACCTCCAGAAGGTTAACTACAAGAAAGCACAACAAGAACATGAAGAGGAACAATTCAAGCAAGCACTTACTGCAGTAAGACAAGGGGGTATCAGAAAAAGCAAGGTTGAGAGTAAGGCTAAAGCCAAGCATCCTCAAAGTCAAATATCACCCTTTAAGCTTCAAAAGCCTGATTTCATCCCAACATTTATTCCTGACATGGATTTTTCTGGTCAAATGACTGTGGAGACACCACCTCCAAAGAATGGTTACTCTGAGGCTGAAAATGATCTTAGATTTATGGAGTCTCCTGTCCATGCTTCTTTAAGTCTAAAAAAAATACGTCAGAACTTTGCTAGGAATTTTCAGAACCTTGAATCAAGGTATGGCTTACTCTAG	3297	0.4095	MPQESSQHSFFTSPSKRGLKGLVSINKEASCTAAATEESFNDHELAQRKAEEAGWRRYKATEWLRQMDHVASSSLSPTPSEEDFCLSLRNGLILCNVLNKVNPGAVLKVVDNPGLAVQSAEGAAHSAIQYFENMRNFLEAGGSSNKVVDCILCLKGFYEWRLSGGVGVWRYGGTVRITSFPKKSPSSSIVGSESADDSVDESESSQYEQLLEFLQLSEDFLIEETRTANAIAFLYDHFGLRLLQAYLREANGIEDLPLNAMVIDTLLSKVVKDFSSLLVSQGNQLGLFLKKILKGDIGCLSKREFIEAISLYLNQRTSLASNDFSKFCNCGGKRDSIRQNANYSAKYAEVINTQQKQLEGMKYFFEETKLEVRQIQSEWEEEFSRLEDHIKSLEVASSSYQRVLEENRLLYNQVQDLKGAIRVYCRVRPFLPGQSNGPSTVDYIGENGDMMIVNPLKHGKDARRVFSFNKVFGTSVTQEQIYADTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTTEETWGVNYRALGDLFHISKERSDSIKYEVFVQMIEIYNEQVRDLLVSDGSSRRYPLSNAYILILYHSLTRYTLDIRNTSQLNGLNVPDAFLVPVTCTQDVLDLMRIGQRNRAVGATALNERSSRSHSVLTVHVRGRELVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAIGETISTLKFAERVASIELGAAQSNKETGEIRDLKEEISSLKLALEKKEAELEQWKTGNARNTVDSQKPRAVSPFQLPKYGTSGNMKHETGQRLMDDRGFESRSCSSGKQRRSRFPSAFIEKDSMPKMSLLTEEKLVSSGMGRSPSPPVRRSLSNDRGSVIKSKVKTETVENQPILKHPFPARVPANKSLVTMPVPASTDNYTRMYVNSQEPVKQENISETLFNLQKVNYKKAQQEHEEEQFKQALTAVRQGGIRKSKVESKAKAKHPQSQISPFKLQKPDFIPTFIPDMDFSGQMTVETPPPKNGYSEAENDLRFMESPVHASLSLKKIRQNFARNFQNLESRYGLL	1098

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g2347	1098	PANTHER	HEAVY CHAIN, PUTATIVE-RELATED	24	1094	-	-
	Aed4g2347	1098	Pfam	Calponin homology (CH) domain	56	140	IPR001715	GO:0005515
	Aed4g2347	1098	SMART	kinesin_4	418	775	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed4g2347	1098	Pfam	Kinesin motor domain	426	767	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed4g2347	1098	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	421	804	IPR027417	-
	Aed4g2347	1098	Coils	Coil	774	808	-	-
	Aed4g2347	1098	PANTHER	KINESIN-LIKE PROTEIN KLP-3	24	1094	-	-
	Aed4g2347	1098	PRINTS	Kinesin heavy chain signature	668	686	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed4g2347	1098	PRINTS	Kinesin heavy chain signature	637	654	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed4g2347	1098	PRINTS	Kinesin heavy chain signature	495	516	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed4g2347	1098	PRINTS	Kinesin heavy chain signature	717	738	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed4g2347	1098	SUPERFAMILY	Calponin-homology domain, CH-domain	50	187	IPR036872	-
	Aed4g2347	1098	Gene3D	Kinesin motor domain	363	769	IPR036961	-
	Aed4g2347	1098	Coils	Coil	376	396	-	-
	Aed4g2347	1098	Gene3D	-	47	158	IPR036872	-
	Aed4g2347	1098	ProSiteProfiles	Kinesin motor domain profile.	420	767	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Aed4g2347	1098	ProSiteProfiles	Calponin homology (CH) domain profile.	54	185	IPR001715	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g2347	Aed-Chr4	25881694	25889519	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g2347	411	767	Calmodulin-binding Proteins	AT5G65930	41.436	1.18e-71	259

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed4g2347	4	25881694	25889519	Aed4g2347	4	25881694	25889519	ECH