Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2346 ATGCCTGGAAGCTTAAGGAATCTCTCATCACTTTCTCCCAAAATCTTTTCCTTCACCTTGCTTCTCTCATTAAACTCCCTTCTCTTTTTCCCATGTTGTTGTTACTCTCTTGATGAGCAAGGCCAGGCTCTTATAGCATGGAAAAAAAACAGCTTGAACATCACTACTTCAGATGTGTTAGCATCATGGAACCCTTCTTCAGCCTCAACAAGCCCATGCAACTGGTTTGGGGTGTATTGCAACTCACAAGGAGAAGTCATAGAGATAAACCTCAAGTCAGTGAACTTGCAAGGCTCATTGCCTTCAAATTTTCAACCTCTCAGGTCATTGAAGATTCTTGTCCTCTCATCAACCAACCTCACTGGAAGCATACCAAAAGAGATAGGAAGCTATCAAGAGCTCATCTTTGTTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATTCCAGATGAAATTTGCAGCCTAAGGAAGCTGCAGAGTTTGTCTCTCCATACAAACTTCCTCCAAGGAAGCATTCCTTCCAACATTGGCAATCTGAATAGTCTTGTGAACTTGACACTCTATGACAATCACCTCAGTGGTGAAATTCCAAAGAGCATTGGCTCCTTGAGCAAGCTCCAAGTCTTAAGAGCAGGTGGAAACAAGAATCTCAAGGGTGAGATTCCATGGGAGATTGGAAACTGCACCAACTTGGTCATGCTTGGCCTTGCAGAAACCAGCATTTCAGGAAGCCTTCCTTCTTCAATCAAGACTCTGAAAAAAATCAACACCATAGCGATATACGCAACTCTATTGTCTGGTCCCATTCCAGAAGAGATTGGCAATTGCAGTGAGTTGCAGAACCTTTACTTGCATCAGAACTCTATCTCAGGCTCAATACCAAGCCAAATTGGAGAACTCACCAAGCTTAAGAGTCTACTTTTGTGGCAAAACAATATAGTAGGAACAATCCCAGAAGAGCTTGGAAGCTGCACAGAGATCAATGTCATAGACTTATCAGAAAACCTTCTCACAGGTAGCATACCAAGGAGATTTGGCAATCTTTTAAATCTCCAAGAGCTTCAACTGAGTGTCAATCAGCTCTCAGGTATAATCCCTCCTGAGATTTCAAATTGCACTTCTCTCAATCAACTGGAACTTGACAACAATGCTTTCTCTGGTGAGATTCCTCGACTTATTGGCAACTTGAAAGACTTGAATCTTTTCTTTGCATGGAAGAACAAGCTAACAGGAAACATCCCAGATAGTCTTTCTGAGTGCCAAGAACTTGAGGCGCTTGATCTCTCTTACAACAACTTGATTGGTCCAATACCCAAACAACTATTTGGGTTGAGGAACCTCACCAAACTGCTGCTTCTTTCCAATGATTTATCAGGCTTTGTACCACCTGATATAGGAAACTGCACAAGCCTCTACAGGCTGAGGTTGAATCACAATAGACTAGCAGGTAACATTCCACCAGAGATTGGAAACTTGAAGAGTTTGAATTTTATGGACATGAGCAGCAATCATCTTTCTGGGGAGATTCCTCCAACACTATCTGGATGCCAGAATCTTGAGTTTCTTGACCTTCACTCCAATAGTCTCACTGGTTCTGTTCCAGATTCTCTTCCAAAAAGCCTCCAGTTGATTGACTTGTCAGACAACAGGCTAACAGGTGCATTGAGTCACACCATTGGTTCATTGGTTGAGTTAACCAAACTCAACCTTGGAAACAATCATCTAAGTGGAAGAATCCCAGCAGAGATCTTGTCTTGCACCAATCTACAACTTCTGGACTTGGGAAGCAATAGCTTCAATGGAGAAATTCCCAATGAAGTTGGTCTAATTCCTTCACTGGCAATCTCCCTCAATCTTAGCTGCAACCAGTTTTCTGGTAAAATTCCTTCCCAGTTCTCTAGTCTTACCAAGCTAGGAATTCTTGATCTCTCACACAACAAGCTCTCTGGGAATTTAGATGCTCTTTCTGACCTTGAAAATCTTGTTTCCATAAATGTTTCCTTCAATGGCCTCTCTGGTGAGTTGCCTAACACCCCATTTTTCCACAAACTCCCTCTTAGTGATCTTGCTGAAAATCAAGGTCTCTACATTGCTGGAGGTAGTGTTGTAACTCCTGGTGACAAAGGTCATGCTAAATCAGCCATGAAGTTCATTATGTCCATTCTATTAAGCACCAGTGCAGTACTAGTGCTTCTCACAATCTATGTCTTAGTCAGAACTCATATGGTCAACAAGGTGCTCATGGAAAATGAAACTTGGGAAATGACTTTGTATCAGAAGCTTGATTTCTCCATTGATGACATTGTATTGAATTTGACATCAGCCAATGTGATTGGCACTGGAAGCTCAGGAGTAGTGTACAAGGTCACAATTCCAAATGAACATGCATCACTTCAGCCTATCACTGAAAAGAGTGATGTGTACAGTTATGGCATGGTTCTAATTGAGGTTCTCACAGGAAGGCACCCACTAGACCCAACTCTACCAGGGGGTGCACACTTGGTTCAATGGGTTAGGAACCACTTGTCTAGCAAAGGAGACCCTTCTGACATTCTTGACACAAAGCTTAGAGGGAGGGCTGATCCAACCATGCATGAAATGCTACAAACTCTAGCAGTGTCCTTTCTATGTGTAAGCACTAGAGCTGATAACAGGCCATCAATGAAGGATGTTGTTGCAATGCTCAAGGAAATTAGACCCCTACTTGAGACCTCAAGGGCAGACCCTGATGAAGTGTTGAAGGGAGGTTTAACAGCACATAGTTCACCACCACCTCCTAAGAATGTGGTCTCTCATGGATCTTCTACATGCTCCTACAATTTCTCAGATAACTCAATCAGTTGA 2844 0.4251 MPGSLRNLSSLSPKIFSFTLLLSLNSLLFFPCCCYSLDEQGQALIAWKKNSLNITTSDVLASWNPSSASTSPCNWFGVYCNSQGEVIEINLKSVNLQGSLPSNFQPLRSLKILVLSSTNLTGSIPKEIGSYQELIFVDLSGNSLFGEIPDEICSLRKLQSLSLHTNFLQGSIPSNIGNLNSLVNLTLYDNHLSGEIPKSIGSLSKLQVLRAGGNKNLKGEIPWEIGNCTNLVMLGLAETSISGSLPSSIKTLKKINTIAIYATLLSGPIPEEIGNCSELQNLYLHQNSISGSIPSQIGELTKLKSLLLWQNNIVGTIPEELGSCTEINVIDLSENLLTGSIPRRFGNLLNLQELQLSVNQLSGIIPPEISNCTSLNQLELDNNAFSGEIPRLIGNLKDLNLFFAWKNKLTGNIPDSLSECQELEALDLSYNNLIGPIPKQLFGLRNLTKLLLLSNDLSGFVPPDIGNCTSLYRLRLNHNRLAGNIPPEIGNLKSLNFMDMSSNHLSGEIPPTLSGCQNLEFLDLHSNSLTGSVPDSLPKSLQLIDLSDNRLTGALSHTIGSLVELTKLNLGNNHLSGRIPAEILSCTNLQLLDLGSNSFNGEIPNEVGLIPSLAISLNLSCNQFSGKIPSQFSSLTKLGILDLSHNKLSGNLDALSDLENLVSINVSFNGLSGELPNTPFFHKLPLSDLAENQGLYIAGGSVVTPGDKGHAKSAMKFIMSILLSTSAVLVLLTIYVLVRTHMVNKVLMENETWEMTLYQKLDFSIDDIVLNLTSANVIGTGSSGVVYKVTIPNEHASLQPITEKSDVYSYGMVLIEVLTGRHPLDPTLPGGAHLVQWVRNHLSSKGDPSDILDTKLRGRADPTMHEMLQTLAVSFLCVSTRADNRPSMKDVVAMLKEIRPLLETSRADPDEVLKGGLTAHSSPPPPKNVVSHGSSTCSYNFSDNSIS 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2346 947 SUPERFAMILY RNI-like 88 386 - -
Aed4g2346 947 SUPERFAMILY Protein kinase-like (PK-like) 798 905 IPR011009 -
Aed4g2346 947 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 793 911 - -
Aed4g2346 947 Gene3D Ribonuclease Inhibitor 37 199 IPR032675 -
Aed4g2346 947 Pfam Leucine rich repeat N-terminal domain 38 81 IPR013210 -
Aed4g2346 947 Gene3D Ribonuclease Inhibitor 202 410 IPR032675 -
Aed4g2346 947 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 792 - -
Aed4g2346 947 SMART LRR_typ_2 300 324 IPR003591 -
Aed4g2346 947 SMART LRR_typ_2 444 468 IPR003591 -
Aed4g2346 947 SMART LRR_typ_2 155 179 IPR003591 -
Aed4g2346 947 SMART LRR_typ_2 348 372 IPR003591 -
Aed4g2346 947 SMART LRR_typ_2 635 658 IPR003591 -
Aed4g2346 947 SMART LRR_typ_2 107 131 IPR003591 -
Aed4g2346 947 SMART LRR_typ_2 562 586 IPR003591 -
Aed4g2346 947 SMART LRR_typ_2 492 516 IPR003591 -
Aed4g2346 947 PRINTS Leucine-rich repeat signature 635 648 - -
Aed4g2346 947 PRINTS Leucine-rich repeat signature 541 554 - -
Aed4g2346 947 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 793 911 - -
Aed4g2346 947 ProSiteProfiles Leucine-rich repeat profile. 637 659 IPR001611 GO:0005515
Aed4g2346 947 Pfam Leucine rich repeat 327 384 IPR001611 GO:0005515
Aed4g2346 947 Pfam Leucine rich repeat 616 671 IPR001611 GO:0005515
Aed4g2346 947 Gene3D Ribonuclease Inhibitor 411 700 IPR032675 -
Aed4g2346 947 Gene3D Transferase(Phosphotransferase) domain 1 766 900 - -
Aed4g2346 947 SUPERFAMILY RNI-like 293 662 - -
Aed4g2346 947 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 792 - -
Aed4g2346 947 MobiDBLite consensus disorder prediction 912 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2346 Aed-Chr4 25874345 25878358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2346 794 946 Receptor kinase-like Gene Family AT5G56040 65.605 5.91e-57 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aed4g2346 LRR_8 1.9e-06 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2346 - - gmx:100802880 1402.11