Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2334 ATGAAGATCACTGTCATGACTGCTGATGAGCAAATCATCACGTTGGATGTGGATTCTCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAGCTTCTGTTTAATGGGAAGGAGGCGAGAAATTCTGAGAAGTTGAGTGCCATTGGTGTTAAGGATGATGATTTGCTAATGATGGTGGCTGGTGCTGGAGCTGGTGGTGGTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTAAATGCTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGATTGCAGGAGATTTTGCGATTGCGTCATAACCAAAGAGACGAATTAAAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCCGATCCTTTTGACGTGGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTACTGGATTCTCCCAATATGGAGTTTCTCTTTGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTATGCGAGTTGGTGGAGGAGAAGTTTCGGTGCCATTTTTGCAAGAGAAAGACATACCAACTCGGTATCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAAGCTCTGGTGGTCAAGTTACATCAGGGAGCAATAATCCATCAACAGGCGGACCCTCTTCTTCTGGAGGAGCTTCTGGTGACAGGTCTAAGGATTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGAAAGAAATGCAGTTATACAGGCTCTTCAATTATCCAATGGCAATGAGGAACAGGCAGCTGGATTTCTTTTTGGGGGCTAG 1239 0.435 MKITVMTADEQIITLDVDSHESVENVKALLEVETSVPLQQQQLLFNGKEARNSEKLSAIGVKDDDLLMMVAGAGAGGGAASSGSTNDLSLNADGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNRLQEILRLRHNQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVMRVGGGEVSVPFLQEKDIPTRYLDEEKYAKEASSSGGQVTSGSNNPSTGGPSSSGGASGDRSKDSEFEAKVAKLVELGFERNAVIQALQLSNGNEEQAAGFLFGG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2334 412 SUPERFAMILY UBA-like 365 412 IPR009060 GO:0005515
Aed4g2334 412 MobiDBLite consensus disorder prediction 336 371 - -
Aed4g2334 412 CDD RP_DDI 187 310 IPR019103 GO:0004190|GO:0006508
Aed4g2334 412 CDD UBA_scDdi1_like 375 410 - -
Aed4g2334 412 SMART uba_6 374 411 IPR015940 -
Aed4g2334 412 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 410 - -
Aed4g2334 412 PANTHER AT13091P 1 410 - -
Aed4g2334 412 Pfam UBA/TS-N domain 375 408 IPR015940 -
Aed4g2334 412 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Aed4g2334 412 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Aed4g2334 412 MobiDBLite consensus disorder prediction 340 367 - -
Aed4g2334 412 SUPERFAMILY Acid proteases 188 303 IPR021109 -
Aed4g2334 412 Coils Coil 132 155 - -
Aed4g2334 412 SMART ubq_7 1 72 IPR000626 GO:0005515
Aed4g2334 412 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Aed4g2334 412 Pfam Aspartyl protease 180 302 IPR019103 GO:0004190|GO:0006508
Aed4g2334 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 369 412 IPR015940 -
Aed4g2334 412 Gene3D Acid Proteases 181 327 IPR021109 -
Aed4g2334 412 PRINTS Ubiquitin signature 11 31 IPR019956 -
Aed4g2334 412 PRINTS Ubiquitin signature 32 52 IPR019956 -
Aed4g2334 412 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Aed4g2334 412 Gene3D - 1 81 - -
Aed4g2334 412 Gene3D - 340 412 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2334 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 1.20e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2334 K11885 - gmx:100779464 719.539