Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2320 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATGCCTTTCAACCTGGCAGTGTTTATTCTGAGCCTTGGTGGCGTGGTAGTGGGTACAATCCCATGGCCCAAACAATGGCTGGGGCTAATGCGTCAAATTCGTCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAGGGCCAGTCTTTGTCCAATAGTGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCGCAGCCTGCTGCTCCTAATGAAACAGGAAATTATGGGCAAGAACAGCAAGGGATGCAGCATACTGCATCATCTGCACCGTCCATGCGTGATGAATGCCTTACTCAGACACCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAACCCTTATCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAATTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCAGTGTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCTGAGCTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCATGAGTCTCGGCACCAGCATGCTATGAGAAGAGCAAGGGGTACTGGAGGACGATTTGCTAAGAAAACTGATGGTGAGGGCCCAAACAACTCAGGCAAGGAAAAGGATAATGGTACTGACTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCATCAAAAGTGCACAGCAAGCTCGAAGCACCAGGTTATCAAAATGGCAATGGCTCCTACCATAACCACAATGGTTTGCAATACCATTCATCTTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAGCAACTGAATCACTATTGA 1008 0.4643 MQSKSETANRLRSDPHAFQPGSVYSEPWWRGSGYNPMAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNETGNYGQEQQGMQHTASSAPSMRDECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGPNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHSKLEAPGYQNGNGSYHNHNGLQYHSSSGERVEEGDCSGQQLNHY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2320 335 MobiDBLite consensus disorder prediction 298 317 - -
Aed4g2320 335 MobiDBLite consensus disorder prediction 207 335 - -
Aed4g2320 335 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Aed4g2320 335 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Aed4g2320 335 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Aed4g2320 335 MobiDBLite consensus disorder prediction 246 287 - -
Aed4g2320 335 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Aed4g2320 335 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Aed4g2320 335 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Aed4g2320 335 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 332 IPR001289 GO:0003700|GO:0006355
Aed4g2320 335 MobiDBLite consensus disorder prediction 1 115 - -
Aed4g2320 335 MobiDBLite consensus disorder prediction 85 115 - -
Aed4g2320 335 Gene3D - 174 236 - -
Aed4g2320 335 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 332 - -
Aed4g2320 335 MobiDBLite consensus disorder prediction 209 228 - -
Aed4g2320 335 MobiDBLite consensus disorder prediction 38 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2320 Aed-Chr4 25672077 25677769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2320 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.511 6.36e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed4g2320 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2320 K08064 - gmx:100808378 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2320 4 25672077 25677769 Aed3g2625 3 28147670 28152896 PCT