Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2299 ATGTCGTATTCAAGGAGATCAAGGTATTCTCCTTCTCCATACAAGAGAGATCGTAGGTCTGTGTCCAGCTCTCTCTCAAGGTCAAGATCCAGAAGTCGTTCAAGGAGTTTACCAAGACATGCCGAAAATCCAGGAAACAATTTATATGTGACAGGATTGTCTCCTAGGATCACCAAGAGTGAACTGGAGAAACTTTTTGCTGCTGAGGGAAAAGTGAGAGATGTCCATCTAGTAGCTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGCTTTGTGACAATGGAGACTGTTGAGGAGGCTGATCAATGTGTAAAGCATCTGAATCGGTCTGTAATTGAAGGACGTGTCATCACAGTGGAGAAGGCTAAAAGACGACGTGGTCGAACCCCAACGCCAGGGAGGTATCTAGGACTGAGAACTATTCGAGCTCGACGTCGCTCTCCAAGTTACTCTCCTCGTCGCTCTCCTAGCTATTCTCCCTACAGAAGAAGATATAGTCTCTCTTCCTATTCTTCAGACCGAAGCAGGAGCCGTTCTTACTCTCCTGACTATAGGAGGCGGCGGTCATACTCTCCACATCACTCTAGGCGAAGGTTTTACTCTCCATACTATAGCCAGTACAGGTCTTATTCTCGATATGATCAACACAGGTCATATTCTCGCTCTCGCTCTCCTCATAGCAGGTCACCTGTCAGCATCCGCAACAGATCATACTCTACCTATGACTCACGATATCACTTACCGGATGATCACTCCTACAGAAGGCACCGTTACAGATCTGTTTCACGAAGTGCCTCTCCTGATGATCGCTATCATGAAAGGCACCGTTACAGGTCTGTTTCTCGGAGTGCCTCTCCTGATGATCGCTATCATGAAAGGCACCGTTACAGATCTGTTTCACGAAATGCCTCTCCTGATGATTGCTATCATGAAAGGCACCGTTACAGGTCTGTTTCTCGGAGTGCCTCTCCTGATGATCGCCATTATGAAAGGCACCGTTACAGGTCTGCTTCACGGAGTGCCTCTCCTGATGATCGCCATGATGAAAGGTACTGTTACAGGTCTGTTTCTCGGAGTGCCTCACCCAGGTCAAGGAGAAGGTCAAGGAGGAGCTACTCACCAAGTGCCACTCGGGTTTCAAAGAGGAGCGACTCACAAAGTGTGTACCCCAGGTCAAGGAGGAGGAGCTCTAAGAGGAGTGGCAAATATGAAAAACGCTACTCAAGAAGCCCGAGTTGGAGCGTGGGTGCTTGTTCAAGATCAGTATCGAGGTCTACCTCTCCTTCAACTTGA 1293 0.4834 MSYSRRSRYSPSPYKRDRRSVSSSLSRSRSRSRSRSLPRHAENPGNNLYVTGLSPRITKSELEKLFAAEGKVRDVHLVADPWTRESRGFGFVTMETVEEADQCVKHLNRSVIEGRVITVEKAKRRRGRTPTPGRYLGLRTIRARRRSPSYSPRRSPSYSPYRRRYSLSSYSSDRSRSRSYSPDYRRRRSYSPHHSRRRFYSPYYSQYRSYSRYDQHRSYSRSRSPHSRSPVSIRNRSYSTYDSRYHLPDDHSYRRHRYRSVSRSASPDDRYHERHRYRSVSRSASPDDRYHERHRYRSVSRNASPDDCYHERHRYRSVSRSASPDDRHYERHRYRSASRSASPDDRHDERYCYRSVSRSASPRSRRRSRRSYSPSATRVSKRSDSQSVYPRSRRRSSKRSGKYEKRYSRSPSWSVGACSRSVSRSTSPST 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2299 430 MobiDBLite consensus disorder prediction 224 242 - -
Aed4g2299 430 MobiDBLite consensus disorder prediction 243 354 - -
Aed4g2299 430 MobiDBLite consensus disorder prediction 150 177 - -
Aed4g2299 430 PANTHER TRANSFORMER-2-RELATED 7 263 - -
Aed4g2299 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Aed4g2299 430 CDD RRM_RBMX_like 45 124 - -
Aed4g2299 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 117 IPR000504 GO:0003723
Aed4g2299 430 MobiDBLite consensus disorder prediction 412 430 - -
Aed4g2299 430 SUPERFAMILY RNA-binding domain, RBD 35 149 IPR035979 GO:0003676
Aed4g2299 430 MobiDBLite consensus disorder prediction 122 197 - -
Aed4g2299 430 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 7 263 - -
Aed4g2299 430 MobiDBLite consensus disorder prediction 212 430 - -
Aed4g2299 430 MobiDBLite consensus disorder prediction 1 49 - -
Aed4g2299 430 SMART rrm1_1 47 120 IPR000504 GO:0003723
Aed4g2299 430 MobiDBLite consensus disorder prediction 10 24 - -
Aed4g2299 430 Gene3D - 2 130 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2299 Aed-Chr4 25505470 25509433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2299 47 129 Eukaryotic Initiation Factors Gene Family AT3G16380 32.530 1.41e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2299 - - gmx:100805126 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2299 4 25505470 25509433 Aed4g2299 4 25505470 25509433 ECH