Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2297 ATGCCAGTCATTGCCGCCAAGCGCACACTGCGATCTCACCCTTCCTCGCCGCCCCGCAAATCGCCCCGCCGATGCACCGCCGCATCCCCCAATTCAACCCCAACGGTAATTCTCAATAACCCTAACGTTCACTTTCACATCTTTTCGAATTACCATAGTGAGCAATTGAAGAGGGCAAAGCTGGCATTGCACTTGTCTACTGCGCCATCTTCGGTGGTGTGCCGCGAGGAGGAGCAGAATGTGGTTTTGCAGTTCTGCAAGGGATCCGTGGAGCACCAGAAGGCTGCCAGCCTTTACATATGTGGCTGTCCTGGAACTGGGAAATCGTTATCTATGGAGAAAGTCAAAGACAGATTACTCAATTGGGCCACCGAGGCAGGTATTCCACTGCCAGATGTTGTATCTGTAAATTGTACAACTCTTAGCAATACATCGGATATTTTCACCAAGATACTTGGGTTAAACCAAATACAGGGTAAAAAGGCTTCAGTCACGCCCTTACAGCAGCTTCAGAACATGTATTCTCAGAAATCGTCTACCAAGAACATGACATTGATAGTAGCTGATGAATTAGATTATTTGATTACAAAAGACAGAGCCGTGCTCCATGATCTTTTCATGCTCACCACCTTTCCTTTTTCTAGATGTATACTAATAGGTGTAGCGAATGCAATTGATCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTAAATTGCAAGCCTATTGTTGTAAATTTCCGGGCTTACTCTAAGGATCAGATATTCAAGATTCTTGAAGAAAGATTAAGTGAACTTCCTTACACTGTCTTCCAACAGCAAGCCCTGGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGCGACATGCGAAATGCTCTTGGTATATGCGGGAGTGCAATAGAGATGCTTGAAGTGGAAATTAAAGAATCTGCCTGCAGTTTGAATACTTTATTGGAAGAGATATCATCCTCCAAACAAAATCTTGCTACAGCTCCTGATTTTATTAAAAGACGAGAATTTGATACTGTAAGGACTGATCATATGGCCCGTGCCTTGTCCAAGAGATATAGATCACCGGTGGTGGATACAATACAATCTCTGCCACATCATCAGCAGATTATACTTTGCTCTTCTATGAATCATTTTCGTGGAGTCAAGAAAGATACAATCCTTGGAGAGTTGTATAAATCATATGTGGGGATATGCAAATCTTGTTTAATTCCTCCAGTGGGTATCATGGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTTGGACAATCTCGAGAGGATAAATTGAGAAAAGTTTCGCCTAAAATAGATGAGAGTGATATTACTTTTGCATTGCAGGTAGTCTTTCTCAGTCCCTTAAGATCTTTAATCATTTGGTTTTTATTATTCCTTGATTTATCTGCATCTGGAAGTTGA 1446 0.4212 MPVIAAKRTLRSHPSSPPRKSPRRCTAASPNSTPTVILNNPNVHFHIFSNYHSEQLKRAKLALHLSTAPSSVVCREEEQNVVLQFCKGSVEHQKAASLYICGCPGTGKSLSMEKVKDRLLNWATEAGIPLPDVVSVNCTTLSNTSDIFTKILGLNQIQGKKASVTPLQQLQNMYSQKSSTKNMTLIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPIVVNFRAYSKDQIFKILEERLSELPYTVFQQQALELCARKVAAASGDMRNALGICGSAIEMLEVEIKESACSLNTLLEEISSSKQNLATAPDFIKRREFDTVRTDHMARALSKRYRSPVVDTIQSLPHHQQIILCSSMNHFRGVKKDTILGELYKSYVGICKSCLIPPVGIMEFSNMCRVLNDQGLIKLGQSREDKLRKVSPKIDESDITFALQVVFLSPLRSLIIWFLLFLDLSASGS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2297 481 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 16 461 - -
Aed4g2297 481 PIRSF Cdc6 5 463 IPR016314 GO:0006270|GO:0051301
Aed4g2297 481 Gene3D - 365 455 IPR036388 -
Aed4g2297 481 Pfam AAA domain 93 210 IPR003593 -
Aed4g2297 481 MobiDBLite consensus disorder prediction 1 33 - -
Aed4g2297 481 SUPERFAMILY "Winged helix" DNA-binding domain 361 456 IPR036390 -
Aed4g2297 481 SMART Cdc6_C_2 376 455 IPR015163 -
Aed4g2297 481 CDD Cdc6_C 369 451 IPR015163 -
Aed4g2297 481 Gene3D - 52 241 IPR027417 -
Aed4g2297 481 Coils Coil 301 321 - -
Aed4g2297 481 CDD AAA 78 236 - -
Aed4g2297 481 Gene3D - 242 364 - -
Aed4g2297 481 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 16 461 - -
Aed4g2297 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 309 IPR027417 -
Aed4g2297 481 Pfam CDC6, C terminal winged helix domain 376 454 IPR015163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2297 Aed-Chr4 25478665 25483283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2297 20 458 Core DNA Replication Machinery Family AT2G29680 57.143 2.55e-178 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2297 K02213 - gmx:100791200 781.941