Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2292 ATGATGAAAGGCATAGGAGGTGGAGTCGGTGGTGCCATTATTCCAATTCATCATGGATGTGGAAACATTAGGGTCATTACTAACCCTTCCATGTGTTCAGTTGGTCCTCCTTTGACAGCCATAGATAGGTTTTTGTGGGGACAACAACAACAACAACAGAATAACGTTGCAAACTACAATGTCCATGCAAGTGGTTTTGATGGTGCTACAACCTACAACTTTCTGTGGCCTAATAGTACTACTACTACAACAACTCAAGAAGTGAGTTTTGTTGAACAGATTATAGCAAATAGTACTGAAGAGGCTCTGATCAATTGGACACAACAAGTGCCATCACTGTGCTTCAAACAAGATGGGATCAATAAGAATGCCAGAGTGGTGGGACGAAGACCTAAGAAATTAGGGTCTTTGTCTGTGCCTTTTATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAACTCTTGAAGTTGGTGAAGCAACATGGTGTGAGAAAATGGTCTCTGATAGCTGAGAAATTGGATGGAAGGGCTGGAAAGCAGTGTCGTGAGAGATGGCATAATCATCTGCGCCCTGATATTAAGAAAGATGGTTGGAGTGAAGAAGAAGAGAGGATCTTGGTAGAAAGTCATGCGAAGATTGGAAACCGTTGGGCAGAGATTGCAAAGCGCATTCCAGGAAGAACAGAAAATGCAATAAAGAACCATTGGAATGCAACCAAAAGGAGGCAAAACTCAAGGAGAAAGAACAAAAGAGCAGCAACCTCAAATGGGAAGCCACAATCCTCTATTCTACAAGACTACATCAAAAGATTGACTTTGACCAACACCACTACTTCTGTGGAACAAACTGCACCACAACAACAACTACTACAACACCTTGCTTTACCTCAACTCTCTGATTCTGTCACCAATAATGAAAACTCCTCATTAGTGGTTGCAGATGAGTCCTATGATGATGATGAGCTTCTCTTCATGAAACAACTTTTGAAGGAGAATGCCATTAATGTTGATCAATCTGCTGCTAAGCAGCACTCCTTGGATTGTTGTTATTATCATCAAACTAACAATGGTGGTGTTCAGTTTCTCACTGATGTCAATCAATGTGGGTTTGTTGTTCATTCCAACAACCCTAACAACAACATGTGCTTGGATCATCATGAGAGTCTCTTCATCTCTAGAAAGAGTAGTAGTACTACTACTCCTCCTTCTGCTCCTCTCAACTACTTTGATTCTGATGTCTATCTTTCTCACTTGCTTAATGGAACTGCTGCTTCTTCTTCTTCTTCATCATTTTGCTATAACAACAATTATGGGATACTTCATCACAACCAGAACATGGAGTTGCAGCTGGGGAATAATAATCAAGATTGTTTTCAAGGAAGAGAGAGATCATGGATATGGTAG 1404 0.4088 MMKGIGGGVGGAIIPIHHGCGNIRVITNPSMCSVGPPLTAIDRFLWGQQQQQQNNVANYNVHASGFDGATTYNFLWPNSTTTTTTQEVSFVEQIIANSTEEALINWTQQVPSLCFKQDGINKNARVVGRRPKKLGSLSVPFIKGQWTDEEDRKLLKLVKQHGVRKWSLIAEKLDGRAGKQCRERWHNHLRPDIKKDGWSEEEERILVESHAKIGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSRRKNKRAATSNGKPQSSILQDYIKRLTLTNTTTSVEQTAPQQQLLQHLALPQLSDSVTNNENSSLVVADESYDDDELLFMKQLLKENAINVDQSAAKQHSLDCCYYHQTNNGGVQFLTDVNQCGFVVHSNNPNNNMCLDHHESLFISRKSSSTTTPPSAPLNYFDSDVYLSHLLNGTAASSSSSSFCYNNNYGILHHNQNMELQLGNNNQDCFQGRERSWIW 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2292 467 PANTHER MYB PROTEIN-RELATED 45 426 - -
Aed4g2292 467 CDD SANT 146 189 IPR001005 -
Aed4g2292 467 PANTHER MYB TRANSCRIPTION FACTOR 45 426 - -
Aed4g2292 467 Pfam Myb-like DNA-binding domain 146 203 - -
Aed4g2292 467 Gene3D - 142 194 - -
Aed4g2292 467 MobiDBLite consensus disorder prediction 239 253 - -
Aed4g2292 467 ProSiteProfiles Myb-like domain profile. 190 240 IPR001005 -
Aed4g2292 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 244 IPR017930 -
Aed4g2292 467 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 193 IPR017930 -
Aed4g2292 467 CDD SANT 198 240 IPR001005 -
Aed4g2292 467 ProSiteProfiles Myb-like domain profile. 143 189 IPR001005 -
Aed4g2292 467 SUPERFAMILY Homeodomain-like 140 236 IPR009057 -
Aed4g2292 467 MobiDBLite consensus disorder prediction 232 260 - -
Aed4g2292 467 SMART sant 142 191 IPR001005 -
Aed4g2292 467 SMART sant 194 242 IPR001005 -
Aed4g2292 467 Gene3D - 197 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2292 Aed-Chr4 25448020 25450452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2292 34 431 MYB Transcription Factor Family AT5G58850 39.853 2.20e-82 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g2292 Myb_DNA-bind_6 3.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2292 K09422 - gmx:100786295 574.318