Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2280 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCACCACCTTACATGTACAATTCCAATTGGGTTCTTGATGAAAACAGGAGCAACAACACAAAATGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGTATGATAAGGACACACCGGATCGGTGGCACAAGGTGGCTGAGATGATACCAGGCAAGACAGTTATGGATGTTGTGAAGCAGTACAAGGAATTGGAAGCAGACGTTTGTGACATAGAAGCAGGGTTGATCCCAATTCCAGGCTACACCTCACCACCCTTCACCTTAGACTGGGTCAACACTCCTGCCTATGATGATGGATTCAAAGGACTCACTGCTAAGAGATCCTCCTCTGCCAGACCCCCTGACCATGAAAGGAAGAAAGGTGTCCCATGGACTGAAGAGGAACACAAGTTGTTTCTTCTGGGGCTGAAAAAGTATGGGAAAGGCGATTGGAGAAACATTTCGCGCAATTTTGTGATTACTCGGACGCCAACTCAAGTTGCTAGCCATGCTCAAAAGTACTTCATCAGACAACTATCAGGAGGCAAGGACAAGAGGAGAGCTAGCATCCATGACATAACAACAGTTAATCTCACAGAAACCACAACCAGAACTTCTTCTGATGAAAGCAAGAGATCATCCACTTCGCCACAACTCTCACATCAACAACAGTCGAATTCTTCTAGTGGCGCCTCATCCGGATTGAATTTCCAGTGGAGCAATCATCAGCCAAATGCAGCTATGCCACTCAATCCTGCACATGAACAAGTTTTCATGTCCCCTTATGGCCTTAACAACAACTCATATGGGTTTAAGATGCAGGGCCAAAATCTGCACAGAAGTTCTCTTCATGAGTCTTCTTACTTAGGACCTCAGACACCAAACATGCTTTACCAATTGCAGCCCTCCCAACACTATTCCCATGCATGA 948 0.461 MKWEMEILPPAPPYMYNSNWVLDENRSNNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCDIEAGLIPIPGYTSPPFTLDWVNTPAYDDGFKGLTAKRSSSARPPDHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTTRTSSDESKRSSTSPQLSHQQQSNSSSGASSGLNFQWSNHQPNAAMPLNPAHEQVFMSPYGLNNNSYGFKMQGQNLHRSSLHESSYLGPQTPNMLYQLQPSQHYSHA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2280 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Aed4g2280 315 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Aed4g2280 315 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 285 IPR043363 -
Aed4g2280 315 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Aed4g2280 315 Pfam Myb-like DNA-binding domain 31 75 IPR001005 -
Aed4g2280 315 Gene3D - 135 185 - -
Aed4g2280 315 Gene3D - 23 91 - -
Aed4g2280 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Aed4g2280 315 SUPERFAMILY Homeodomain-like 30 83 IPR009057 -
Aed4g2280 315 SMART sant 133 183 IPR001005 -
Aed4g2280 315 SMART sant 28 80 IPR001005 -
Aed4g2280 315 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 285 - -
Aed4g2280 315 CDD SANT 31 77 IPR001005 -
Aed4g2280 315 ProSiteProfiles SANT domain profile. 27 77 IPR017884 -
Aed4g2280 315 ProSiteProfiles Myb-like domain profile. 24 78 IPR001005 -
Aed4g2280 315 MobiDBLite consensus disorder prediction 198 250 - -
Aed4g2280 315 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Aed4g2280 315 MobiDBLite consensus disorder prediction 192 250 - -
Aed4g2280 315 SUPERFAMILY Homeodomain-like 131 184 IPR009057 -
Aed4g2280 315 CDD SANT 136 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2280 Aed-Chr4 25365920 25368601 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g2280 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2280 - - gmx:100784163 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2280 4 25365920 25368601 Aed4g2280 4 25365920 25368601 ECH
Aed4g2280 4 25365920 25368601 Aed3g2131 3 25102943 25105270 ECH
Aed4g2280 4 25365920 25368601 Aed2g1191 2 10243536 10244003 ECH
Aed3g1828 3 22729269 22731921 Aed4g2280 4 25365920 25368601 ECH
Aed9g1974 9 23056039 23058682 Aed4g2280 4 25365920 25368601 ECH
Aed2g1191 2 10243536 10244003 Aed4g2280 4 25365920 25368601 ECH