Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2261 ATGGCACACCACACCATGGAGGAGGAGGACTTGAACATCTTGGAGATGAACGACAGCAATAATGATGCTATTACAAGTGCAAAGGCTGCACCACCACCGCAAGCAAAGAACCTTAGTTCAATTGTGACAAAGAAGTATCCATTTCTTGACTCCAAAGTTCGCTCACAAATGCTTGGGAATTTCACAACCAATTTGCGAGTGGTCATTTTTGGGACTAAGCTTGCACTGCTTTTTCCGGCTGTCCCTTTAGCTGTTGTTGCAGATTTTTATAGCCTTGGAAGGCCTTGGATTTTTGCTTTGAGCCTACTTGGACTCGCCCCGCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTTCACTGGCCCCACAGTTGGGGGGCTTCTGAATGCAACATGTGGTAATGCAACCGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTTAATGTTGTGAAATTCTCCCTTCTGGGTTCCATTTTCTCAAACCTTCTATTAGTCCTTGGAACTTCACTCCTCTGTGGTGGCTTAGCCAACCTTAGGAAGGAGCAAATATATGACAGGAAACAGGCAGATGTAAACTCACTGCTTTTGTTGCTGGGCTTGCTATGCCATTTGCTGCCATTACTGCTCAGATATGCCTTAGCAGGGGAATATCCTTCTTCTATAGCCACTAGTAATCTACAATTGTCAAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGCTGGGTACATCTTCTTTCAATTAAAAACACATCGACAAATTTTTGATGCACAAGAGGAAGATGAAAATGAAGACGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTTGGTATGACACTTGTCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGTTACCAATTGTGGGAAACGCTGCAGAACATGCTGGGTCAATCATATTTGCTTTTAAAAACAAGTTGGACATATCTTTGGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTTAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGATTTGGATTTCAATCTCCTTGAAACTGGGTGTCTTGCTTTCACAATTATTGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTTTCCTGTGTTATATTATTATTTCTGCATGCTTTTTTGTTCACAAAACTAGTACTCCACTTATCAATGAAGCATAG 1314 0.4125 MAHHTMEEEDLNILEMNDSNNDAITSAKAAPPPQAKNLSSIVTKKYPFLDSKVRSQMLGNFTTNLRVVIFGTKLALLFPAVPLAVVADFYSLGRPWIFALSLLGLAPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKFSLLGSIFSNLLLVLGTSLLCGGLANLRKEQIYDRKQADVNSLLLLLGLLCHLLPLLLRYALAGEYPSSIATSNLQLSRASSIVMLLAYAGYIFFQLKTHRQIFDAQEEDENEDEEKAVIGFWSAFTWLVGMTLVISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPFSVVVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLFLCYIIISACFFVHKTSTPLINEA 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2261 437 TIGRFAM caca2: calcium/proton exchanger 61 425 - -
Aed4g2261 437 Gene3D - 273 426 IPR044880 -
Aed4g2261 437 Gene3D - 125 269 IPR044880 -
Aed4g2261 437 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 25 431 IPR004713 GO:0006812|GO:0008324|GO:0016021
Aed4g2261 437 PANTHER VACUOLAR CATION/PROTON EXCHANGER 25 431 - -
Aed4g2261 437 TIGRFAM cax: calcium/proton exchanger 79 425 IPR004798 GO:0006816|GO:0015369
Aed4g2261 437 Pfam Sodium/calcium exchanger protein 282 421 IPR004837 GO:0016021|GO:0055085
Aed4g2261 437 Pfam Sodium/calcium exchanger protein 96 254 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2261 Aed-Chr4 25218663 25222193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2261 18 428 Antiporters AT2G38170 65.640 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2261 K07300 - gmx:100778821 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2261 4 25218663 25222193 Aed4g2261 4 25218663 25222193 ECH
Aed4g2261 4 25218663 25222193 Aed3g1843 3 22821642 22825593 PCT