Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2258 ATGAAAACAATAGATAGCATGAAGGCCCAGGTAACAATGAACAAATTGGACCAAGCAACTTCAAAGAAATGCTTAAGTGTCGCACACCCATTGGTTGAGATGACGAATGAGAATTTGAGACTTTCTCATATAAAACGACAATTCCCTACACCGTATTGTTTCTCACTCACTCTCTGTTGTAGCGACGAAACTGAGATCGTAGGAAGAATGGCGAAAACGACGTCGTTGCTGCTCTGTACAGTGGTCCTCTTCGGAACCCTAGCTCTCATCCAGGCGAAGAAATCAACGGAGAATTTGAAGGAAGTGACCCACAAGGTTTACTTTGATGTTGAGATTAATGGAAAACCTGCAGGTCGTATTGAAATGGGTCTTTTTGGGAAGACTGTTCCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGGGAAAAGGGAACTGGTAAGAGTGGAAAGCCTCTCAGTTACAAAGGTAGCTCTTTCCATAGAATTATTCCTAGCTTTATGCTTCAAGGAGGTGATTTTACACATGGAAATGGAATGGGTGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGATAAAGCATACTGGACCAGGACTTCTATCAATGGCAAACGCTGGTCCTGGTACCAATGGTTCACAATTTTTCATTACAACTGTGACAACTAGCTGGTTGGATGGAAAGCATGTTGTTTTTGGTAAAGTTATTTCCGGAATGGATATTGTTTACAAGATTGAAGCTGAAGGAACTCAAAGTGGCACTCCCAAGAGCAAGGTTGTGATTGTTGACAGTGGTGAACTCCCTCTATAA 822 0.4197 MKTIDSMKAQVTMNKLDQATSKKCLSVAHPLVEMTNENLRLSHIKRQFPTPYCFSLTLCCSDETEIVGRMAKTTSLLLCTVVLFGTLALIQAKKSTENLKEVTHKVYFDVEINGKPAGRIEMGLFGKTVPKTAENFRALCTGEKGTGKSGKPLSYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKIKHTGPGLLSMANAGPGTNGSQFFITTVTTSWLDGKHVVFGKVISGMDIVYKIEAEGTQSGTPKSKVVIVDSGELPL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2258 273 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 107 270 IPR002130 GO:0000413|GO:0003755
Aed4g2258 273 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 155 172 IPR020892 GO:0003755|GO:0006457
Aed4g2258 273 Gene3D - 91 272 IPR029000 -
Aed4g2258 273 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 108 268 IPR002130 GO:0000413|GO:0003755
Aed4g2258 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 231 246 IPR002130 GO:0000413|GO:0003755
Aed4g2258 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 139 IPR002130 GO:0000413|GO:0003755
Aed4g2258 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 203 218 IPR002130 GO:0000413|GO:0003755
Aed4g2258 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Aed4g2258 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 218 230 IPR002130 GO:0000413|GO:0003755
Aed4g2258 273 SUPERFAMILY Cyclophilin-like 101 271 IPR029000 -
Aed4g2258 273 CDD cyclophilin_ABH_like 104 269 - -
Aed4g2258 273 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 81 273 - -
Aed4g2258 273 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1 81 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2258 Aed-Chr4 25203884 25206993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2258 118 268 U-box Gene Family AT5G67530 41.830 1.80e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2258 K01802 - gmx:100305485 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2258 4 25203884 25206993 Aed4g2258 4 25203884 25206993 ECH