Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2254 ATGTGCAGTGGTTCCAAGAGAAAACCTTCCCAGACTGGTTTAATAATGGGGGATGAGTATGGAAGACAAGAAGGGTTGCATCATAAAATTTCAGCTTTGTTCGAGTTTGCAGCCGCCGATGATGTAACGGCTTTCAAAGATGCTGTTGAAAATGAGGGTCTTGATGTTGATGAGGTGGGGTTTTGGTATGGAAGGAGGGTTGGCTCAAAGGATTTGGGTTTTGAAGAGAGGACCCCTCTTATGATCGCTGCTATGTTTGGAAGCCAAAGTGTGTTATCCTATATTCTTGGGATGGGTTGTGTTGATGTTAACCGGGCTTGTGGGTCAGATGGGGCTACTGCCCTTCACTGTGCTGTTGCTGGGGGTTCTGCTGCCTCCCTTGAAGTCATCAAGCTTTTGCTTGATGCATCGGCTGATGTTAGTACTGTGGATGCCAATGGAAACAGGTCGTGCGACTTGATTGTGTCGGTGTCTAATGGTGCGTTCAATTCAAGAAAGAGGATACTGCAAGCCATTCTAGAAGGCGCAGGTGGTATTGGTGAGGGTTGCTTTAAATTTGAGGAACATGTTGGCCAAATGGAGAAACAGCAATGGCGAGATGTAGATGCACTTCAGGTTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTGTTGATCTCTCTCTTCCGGACATAAAGAATGGGATATATAGCACAGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGAGCTTACTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCCGGGGAAAATGCAAGGCGCCGTGATCCAAGGAGATATCAATATAGCTGTGTCCCTTGCCCCGAGTTTCGGAAGGGAGCCTGCAGCAAGGGGGATGCCTGTGATTATGCACATGGTATATTTGAGTGCTGGCTTCACCCTGCGCTATACAAAACCCGGCTTTGCAAGGAGACAGGATGCACCAGAAGAGTTTGTTTCTTTGCTCACAGCGTGGAGGACCTTCGCCCCCTGTATGCTTCCACTGGTTCTGCTATGCCTTCTCCCAGATCATATTCTGTTAGTTCTCCTTCATTGGACCCTTTCACCCTGGGCTCTCCATCTGCTTTGATACCACCTGCCTCAACCCCACCTTTGACTCCATCTGGAGGATCTTCTCCTGCGGGTGGAACTATGTGGCACTCTCAGCCTCATGTTGCAGTCCCTAACCTTCAGCTTCCCCGAAGCAGATTGAAATCAGCACTAAATGCTAGAGATGTTGAATTGGACATTGAATTTCTTGGACATGAAAATCATCGACTTTTGATGCAGCAGCTAATGATGGAAGAGATGGCTGGTCTTTCATCGCCTTCTAACTGGAAAAACTCCATGCCTAATAGTCCATCTCTTTGTGATTATACTGGGGAGTACAATAGGCTTGCAGGAGTGCAACCAACTAACCTTGAGGACATTTTCGGGTCTCAGATACAGTCCCCAGCCAGAATTCAAGTGCATCAAAATGTGAACCAGCAACTGAGAGGCTATCCTTCCAACCTTTACAATTCATGTGTGATTGGATCACCCTCATTCAGGGGTGATGCAAGAAATGCTGCCTTTGCTAATCGGAGTCAGAGCTTTATTGAGCCTAATATGGTTAACAGTGATTCTGAGTTTCCTTCTACTGCTGCTGAGCCGTCTACCTCCCCTGGTTGGGGTTTCTCTGATGGTAGGTTAGATTGGTCCATCTGTGGCAATGAACTAAAGAAGCCGAGCAAATCTTCTTCTTCTGGATTTTTGAAGCAGTAG 1782 0.4658 MCSGSKRKPSQTGLIMGDEYGRQEGLHHKISALFEFAAADDVTAFKDAVENEGLDVDEVGFWYGRRVGSKDLGFEERTPLMIAAMFGSQSVLSYILGMGCVDVNRACGSDGATALHCAVAGGSAASLEVIKLLLDASADVSTVDANGNRSCDLIVSVSNGAFNSRKRILQAILEGAGGIGEGCFKFEEHVGQMEKQQWRDVDALQVSKDGTEKKDYPVDLSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYQYSCVPCPEFRKGACSKGDACDYAHGIFECWLHPALYKTRLCKETGCTRRVCFFAHSVEDLRPLYASTGSAMPSPRSYSVSSPSLDPFTLGSPSALIPPASTPPLTPSGGSSPAGGTMWHSQPHVAVPNLQLPRSRLKSALNARDVELDIEFLGHENHRLLMQQLMMEEMAGLSSPSNWKNSMPNSPSLCDYTGEYNRLAGVQPTNLEDIFGSQIQSPARIQVHQNVNQQLRGYPSNLYNSCVIGSPSFRGDARNAAFANRSQSFIEPNMVNSDSEFPSTAAEPSTSPGWGFSDGRLDWSICGNELKKPSKSSSSGFLKQ 593
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2254 593 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Aed4g2254 593 PANTHER UNKEMPT FAMILY MEMBER 19 591 IPR045234 -
Aed4g2254 593 MobiDBLite consensus disorder prediction 365 391 - -
Aed4g2254 593 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Aed4g2254 593 SMART ANK_2a 75 105 IPR002110 GO:0005515
Aed4g2254 593 SMART ANK_2a 110 142 IPR002110 GO:0005515
Aed4g2254 593 SUPERFAMILY Ankyrin repeat 31 156 IPR036770 -
Aed4g2254 593 Gene3D - 275 336 - -
Aed4g2254 593 Pfam Ankyrin repeats (3 copies) 71 142 IPR002110 GO:0005515
Aed4g2254 593 Gene3D - 26 172 IPR036770 -
Aed4g2254 593 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 19 591 - -
Aed4g2254 593 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Aed4g2254 593 SMART c3hfinal6 309 331 IPR000571 GO:0046872
Aed4g2254 593 MobiDBLite consensus disorder prediction 542 560 - -
Aed4g2254 593 MobiDBLite consensus disorder prediction 542 565 - -
Aed4g2254 593 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed4g2254 Aed-Chr4 25165827 25167608 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2254 28 491 C2H2 Transcription Factor Family AT5G12850 45.010 8.92e-132 400
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed4g2254 Ank_2 9.2e-08 CL0465
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2254 - - gmx:100806121 1005.74