Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2251 ATGTCCATCCAGTATTCCCCGCCCTCGCCGGCGACTCTCGACACCATCCGCGTCTTCCTCTCCGACATCTCCACTCCCCGGCCGGACCACCGTCCCTTCGACACGCCCCGCCGCTTCGCCGCCTTCGCCCAGCGCCTCTCCCACCTCCTCCTCCTCCCGCTCCCGCACTCCCCGCCCGTTCACACCGCCCTCAAGGGACTCTCCGGCGAGCTCTCCAAGGCCGCCGAAATCGTCTCCCTCTACAACAACGCCAGCAAGATACTAGTCCTTGTCTGCTGCAAAATCCTATGCTCCGACCTACAGGAACGCGTCGTCGCCATTGCCGCCTGGCTCGCACTCCTCGCTTCCGCCCTCCCCGCCGCCGCCGAAGACAACGACCTCCGCAAGAAGGTCTCCGACCTCGCCAGGGACATGAAGCTCGCACACTTCAAAGTCTCGGAGAACGAAGAGAGGGTTTGGTGCTCACTGGAAAAGGAAGGGCAAGGGAGAGAGAGCAGCAAAGCAGTGCAGAGTGGTATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCGTGCTGAGTTTTGTAACCAAGTGAAGCTCTTCAAAGGCGATCCTTTTAGATCCAATTCTGTGCCTGAGAGAAGGGTATTGATGTCCTTGGAGAGGATTCTTAGTAACTGGTCTGTGGAGCCTGTCTCTGTGAGCCCCAATTGGGACTTTGAAATTGTTGAAGATGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTCCTTTGCCCCTTGACCAAGGAAGTCATGAAGGACCCTGTGGTTGTTCTGGAGTCCTCTCAGGCCTATGAGAGGACTGCTATTGAGTACTGGTTTGAACGGTGCATCCAGGACGGCCGTGACCCCACTTGTCCGGTCACTGGCAGAGTTCTTAAGTCCTTAGAGCTGAAGCCTAATATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGAAGGGTTGTTGAGTGTCAAATCAAATCTGCAGTGCAGTATCTGTGTGAGGAACCCTTGTCTGTTGATCATGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCTCTAGAAGATACATAATCAGGAATGCTGGTGTTGTGCAGTTGATAGTGACTTTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGCAAAGCTCTAATGACTTTACTTAGCTTGACCGAGGATGAAGAAAGCAGGAAAATAATGCTTGAACGGGGTATCACTAGATTGGCTGTACATAGTCTTATTGGGAGCTCTGAGAAAGAGAGAGAATATGCGATCAAGTTATTACTAGAGTTCTGCAATGATGAAGATTGTTGCATAAGAATTGCATCAGAAAAAGGTGCATTAGTTCTTCTCTCAAGTATAGCAGGAAATCTGGAGTATCCATCCTTGTCCAATTTAGCTGAGGAAGTTTTAAGGCAGATGGAGAGGGTAGAGGATACTGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCGTTGATTTCACGGTTACATGATGGTTCTGTTGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCTAGAGTATTTGTCGAACTTCTGTCTCATCAAGAAGGAAGGGGACCAAGTCTGCAAGCATTGTATAACTTGTCAGGATTGGATGGCAATGCTACCATCCTTATTGAATCTTCAGTCCTTCCATCTCTTTTAGAAGTTTTATTTGATGAGCAGGATCCATCATATGAGCTGAAGTCATTAGCTGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCCGACAAGAAAGGAAACCCAATGCAGTCAGAAATTATTGTTTTAAGACTTTTGGGGCTTTTAAACAGTTTGCCCTCTCAGTGTCAAGTGATAGTTCTTCGCATTCTTTGTGGTATTACATCATCTCCTCAGGCATCAGAGTTAGTAGCAAGTCATATCACGTCCAAGGGTGGCTTTGAAACGGTCATACCATTTCTTGAACATCCAGAAGTTGAACATAGAGTGTTTGCTTTCAAGCTTACAAGACTACTATCTCAATGGTTTAGTGAATATATTGCAAATGAGTTGAGACTGTCAAACAAACTTACGGTACTCAAAGAAAAGCTGTTAAACAACCAATGTACAGGTGATGAGAGATCAGATGCAGCACAGATACTTGCCAATCTTTCCCTCTCAGAAGGTGAAGTACAGACACTTTTAGGAGGTGACTTTGTGGAATGGACTGCTGCTACTCTCAAGAACCAGCGGCGCATTTCCAGTACAAGGTCTTCTCATACTGCATCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACATCACAGGGAACCTTGATCAACAAACTCTTAATATAGTTAGAGAGAATCGCCTTATGGCCATTTTCTGTGAGCAGCTGGACTATACTTCAAAACCAAAGGTAAAACGACTCGCTGCCATTGGTTTGAAAAACTTATCAGAATTTGGGAAATCAGTTACTGCTAGGGACTCTAAACCACCATCTTCCAGTGGGTTCTGCTCTTCCCTCATGCTCGTGTGTGGAAAAGCCTCTAGCCAACCTTCCACATGCCCCATCCACAACGGCCCGTGCAATGAAGATAATCAGCTGTGCCTCCTCAAGAGCAACTGTATCAAACCCCTTGTTGACATCCTCCATGACAATGACACTGATGTTCAGCTTGCTGCAGTGGATGCTCTATCTACTCTAGTACTAGATTATGCATCTCACAGTTTCAAAAGAGTTGTGGATGAGCTAGAGCATCAGGGTGCAATTGATCCTCTTATCACTCTTTTTACAGAAGTTAGATCTGAAGAGCTTCAGGAGAAGACAATTTGGATGATAGAAAAGATATTGAGAGTGGAAAATATCAGCAATCGGCATGCACTCAATCATTCTCTTGTGAGAGCTTTGGTTGAAGCCTTTAAGCATGGGAATAGCAACACAAGGAAACATGCTCAAGATGCTCTAACCCTCCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAGCTAGAAGATAG 3117 0.4649 MSIQYSPPSPATLDTIRVFLSDISTPRPDHRPFDTPRRFAAFAQRLSHLLLLPLPHSPPVHTALKGLSGELSKAAEIVSLYNNASKILVLVCCKILCSDLQERVVAIAAWLALLASALPAAAEDNDLRKKVSDLARDMKLAHFKVSENEERVWCSLEKEGQGRESSKAVQSGIVMDLARALGFDPGDRAEFCNQVKLFKGDPFRSNSVPERRVLMSLERILSNWSVEPVSVSPNWDFEIVEDAAAPVFPFKSFLCPLTKEVMKDPVVVLESSQAYERTAIEYWFERCIQDGRDPTCPVTGRVLKSLELKPNIGLAGAIEEWVGRVVECQIKSAVQYLCEEPLSVDHVERALDHVYKVSEEHPSRRYIIRNAGVVQLIVTLLSNNSKTIGSRLRSKALMTLLSLTEDEESRKIMLERGITRLAVHSLIGSSEKEREYAIKLLLEFCNDEDCCIRIASEKGALVLLSSIAGNLEYPSLSNLAEEVLRQMERVEDTVQCLAAAGRFGPLISRLHDGSVGVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLSHQEGRGPSLQALYNLSGLDGNATILIESSVLPSLLEVLFDEQDPSYELKSLAASTIANIVSKPGHWELASADKKGNPMQSEIIVLRLLGLLNSLPSQCQVIVLRILCGITSSPQASELVASHITSKGGFETVIPFLEHPEVEHRVFAFKLTRLLSQWFSEYIANELRLSNKLTVLKEKLLNNQCTGDERSDAAQILANLSLSEGEVQTLLGGDFVEWTAATLKNQRRISSTRSSHTASGMQEGLIGLLLHITGNLDQQTLNIVRENRLMAIFCEQLDYTSKPKVKRLAAIGLKNLSEFGKSVTARDSKPPSSSGFCSSLMLVCGKASSQPSTCPIHNGPCNEDNQLCLLKSNCIKPLVDILHDNDTDVQLAAVDALSTLVLDYASHSFKRVVDELEHQGAIDPLITLFTEVRSEELQEKTIWMIEKILRVENISNRHALNHSLVRALVEAFKHGNSNTRKHAQDALTLLKQLSGVSGKTSSQTRARR 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2251 1038 SMART Ubox_2 252 321 IPR003613 GO:0004842|GO:0016567
Aed4g2251 1038 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1033 - -
Aed4g2251 1038 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 418 IPR000225 GO:0005515
Aed4g2251 1038 SMART arm_5 939 980 IPR000225 GO:0005515
Aed4g2251 1038 SMART arm_5 892 932 IPR000225 GO:0005515
Aed4g2251 1038 SMART arm_5 361 405 IPR000225 GO:0005515
Aed4g2251 1038 SMART arm_5 569 612 IPR000225 GO:0005515
Aed4g2251 1038 SMART arm_5 531 568 IPR000225 GO:0005515
Aed4g2251 1038 SMART arm_5 807 848 IPR000225 GO:0005515
Aed4g2251 1038 Coils Coil 480 500 - -
Aed4g2251 1038 ProSiteProfiles U-box domain profile. 248 328 IPR003613 GO:0004842|GO:0016567
Aed4g2251 1038 SUPERFAMILY ARM repeat 367 978 IPR016024 -
Aed4g2251 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 324 IPR013083 -
Aed4g2251 1038 Pfam U-box domain 253 322 IPR003613 GO:0004842|GO:0016567
Aed4g2251 1038 SUPERFAMILY RING/U-box 251 322 - -
Aed4g2251 1038 Pfam Armadillo/beta-catenin-like repeat 892 930 IPR000225 GO:0005515
Aed4g2251 1038 Gene3D - 325 851 IPR011989 -
Aed4g2251 1038 Gene3D - 889 1034 IPR011989 -
Aed4g2251 1038 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1033 - -
Aed4g2251 1038 SUPERFAMILY ARM repeat 634 848 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2251 Aed-Chr4 25136662 25142338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2251 250 1027 U-box Gene Family AT1G20780 30.139 1.24e-90 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2251 - - gmx:102659945 1789.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2251 4 25136662 25142338 Aed4g2251 4 25136662 25142338 ECH