Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2245 ATGGTGATGGAGGAGAACGACAACTCTCAGAACAGGAAGCGAAAACGAGGGTTTCCTAGGAAGCTTGGAGTCAATGAAAAGGTCGAGGTGAGGAGCACGGATTTGGGGTTTCAAGGATCATGGCACCCTGGGACAGTTATCCGGTGTGAGAAGATGAAGCGGCATGTGAAATATAATAACATTTTGGATGATGATGGGGTCAATTATGTTGAGGAGGCAGTGAGTGTTTCAGAAGCTTTGGATGGTGATAAGGAAGATTACTGCTATGCACGTGGGTTCATTAGACCTGCGCCTCCCGTGGTTGAGTTTAAGAGAGAGGACCTTAAGTTCAGTCTGTGTGTTGATGTGAACCATCATGAAGCTTGGTGGGAAGGTGTCATATTCGATCATTGTGACGGAATGGAGAAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGCAAGTTGAAATTCAGCAGTTGCGAATTACTCAAGACTGGCACGAAGTTACCGATGAGTGGGAGCAGCGGGGCAACTGGGTGTTTCTTGATTTGGTTGAGGAGCAGAAGAGGAATTTGTTTGTTGCAGTTTCAGCCAAGCAGATTTGGTATGATGTACGCACAAAACGGGAATTTGGGATGGTCAGAGAATGGACATGTAATGTGAAGTACTTGTGGAGAGATCTGGTAATGGAGGTAGTTAATGACTACTTATCTCTTACGGTAAAAGAAGTTATCTCAGCCTTAAACCTTCCACGGACTCCGTTAAATGAAGCACTGGAGCGGGATTCTGTTGAAGCCATGACTAGTGTTGATAAGGAAATTGTTGTGCAGAAAGAACCTGGTCCTCTGGTTAAAGAGAGTTTACCTGAGTTGCAAAAAGAAATTAGTCCCTATGTTGCTTGTAATGTAGTTTCAGATGCTATCTGTTTTGAAGGAAGTAGAGAAAATGGATCCTCTACTCGATTAAGGTCCAACTATTGGAAGCCTCTGGAGATGTGTGAAGTTGAATTATGCCCTGATGCTGTTAGGGAATATCTACTTGCTTCCAATCCAGCAATCAGGGCATTATGGAAGGAAAAATTACAAAAACATCTTGTATGTCTTGGATGGAAAATTGAGTATAATGTTCCTGACCAGCAGGGGCAAAAATTTTACCTTTCACTCATCAAAGTGTGCCGAGATATGGAAAAGGACCCCAACATGAACTCCTCGTGGCTGCAAAATGATCGCTGTAAAATTGATGCTACACTTGACTGTCATCTTCCAGTTTCAGCTGTGTCTCTCAATTCATCTGAAAATGTTCAGAATCCAGACATCTATCCTCCAACTGTGCTGCCATCTCCTCCGGTTGAAAATGAAGCTGCTGAAGATGTACCTGATTTTTGTACCAAGGCTTTTGAAATTTGTGGAGTTATGGAAAATGACCCCAACACAAACTCCTCACAGCTGCAAAATGATCCCACAGTTGACTGTCATCTTACAGTTGTGCCTCTTAGTCCATCAGAAAATATTCAGAATCCAGATATCTTTACTCCTCTGGTTGAAGATGAAGTTGAAGATGTACCTGAGTTTTGTCCTGGGGCTGTTGAGCAGTATTATCGTTTGCATATATCCAAAGAGAGTCGGGTTGAGAAAAGAAGATGGATACTGAAAGCAAAGAATCATTTGTTAGCTGAAGGATGGATTTTTGACTATCCACTTCCAACCCATAAGAAAAGGGGAATAATATACATATCTCCACAAAATCGGAGATTCTCAACACTCCATGCAGCATGCAGATTTTCTATGGAAAAAGGTATTTCTAAATTGGCTATATCTGGCACGGAAGGCGTGAAAGAAGAAAATGTTGATCTGGTTTGTAGTGGGGAACTAGTTTGTAGACCATCCCAGTTGCTTCCAAAGGACTTTGACTCGCAGACTGTGAATGGTGGTGCTGCTAGCAGACCTGCTGGAAATCAAAAGCGGAAAAGCTTGAGGGATTCAAAGGCCAACATACCCAAGTGCCAAAGCAATGGATTGCCTCTACGGGTGCTAAGATCAAAAAAGAGGGTGCAAAAGGTGTCTGCCCCATCTCTTTTACCTCATAAACCTCTGAATGTTCTGTCTTGCTTGATAGACAACAGCATCATCTTACCGAGGTGTAAGGTTTATTATAAGGCAAAAGGCAGGTACCGTAATGTCCGTACTTTGGCTGAGGGGAAAATAACTCGCGATGGAATCAAGTGTAACTGTTGCCTGGCAATATACAGTTTTGTTGGCTTTGAAAATCATGCTAGTGGCAGTAGTACCCGCAGACCCTCTGCTAGTATCTTTTTGGAAGATGGCAGGTCACTCTTAGATTGCCAGATACAAATGATGCACGAACATAAGACAAAGGAAACTAGTGGAAAAGCATTCAGTGGTTTGTTTCCAGCCGAGAATGATTACATTTGTTCTGTTTGTCACTATGGTGGTGAACTTATTTTATGTGATAAATGTCCGTCTTCATTTCATAAGACGTGTCTTGGTTTGGAGGATATCCCTAATGGTGACTGGTTTTGTCCATCATGTTGTTGCGGGATTTGTGGCCGAAGGAAAATTGATGGAGATGAGGTTGGAAATTTCCTTATTTGCATTCAGTGTGAACATAAATGTAAGAGAGTGGGTGAGTGCAAACAGAAGGGAACCATGGCTGTTAGCAGTGATAGGAGTAGCACTATGATTTTCATCTTAGCACAGGAACAATCTAGCATCAAGAGATGCTTTATACATGAGGGCCTTCATAAATTATTAGGGGAGTCAGTTTCAGTGGGTGTTGACAATCTAACTTGGACATTGGTGAAGTTTATCAACCCTGACAGTTGTGAACCTGGTAGTAGTGAAAGTGATTTATTGGCAGAAAGTTACAGCAAGCTCAATCTTGCTCTTTCGGTGATGCATGAATGTTTTGAGCCCCTAAAGGAATCCTTCACAAGCAGAGATCTCGTGGAAGATGTTATATTCAGCAGATGGTCAGAGCTCAACCGGTTGAATTTCCAGGGTTTCTATACTGTGCTACTTGAAAGAAATGAAGAACTGATTAGTGTGGCAACTGTTAGGGTCTATGGGAAGAAGGTTGCTGAAATACCCCTTGTTGGTACCAGATTACAATATCGTCAACAGGGAATGTGTCGCATTTTACTAAAAGAGCTTGAAAAGGAGCTCACTCAATTAGGGGTGGAGAGACTTGTGTTGCCTGCTGTTCCTAGTGTGCTAGAAACATGGATCCGTTCTTTTGGTTTTGCAAAGATGACTAATTTGGAGAGATATCAATTTCTGGACTATATTTTCCTAGATTTTCAGGGTGCCATCATGTGCCAAAAGCTGTTGACAAATAATCCATATCCAGATCCAATCTTGTTAGTAGAGTCACAACCAAGATGTGATGTTTCTTCTGGAAGTTGTTGTGTTAACTTCAGTAAGTCTAGTTCAGTATGTGAAGAGATTGACGAGAGAGCGATCATGGATCAACAAATGAAAGATACTTGTGTAGGCATCACTGATCAAGTTACTACTGACTCAGTCACCATGACCATGGTACTCAATGATCAAGTTAGTGGTGCTACTGACTCAGTCACCATGAGGGTGGAGCAACCGATTCATGGGGATCAACGGTGCCTAAATGGAATAACCGGCTCAGAGTGTTCTACTAATAAACAAGTTGAGAGAAACAATGACCCTTATAAGTTCTACACTCGAAGGAAAGTGAGAAATGTCATATGA 3726 0.4208 MVMEENDNSQNRKRKRGFPRKLGVNEKVEVRSTDLGFQGSWHPGTVIRCEKMKRHVKYNNILDDDGVNYVEEAVSVSEALDGDKEDYCYARGFIRPAPPVVEFKREDLKFSLCVDVNHHEAWWEGVIFDHCDGMEKRSVFFPDLGDEMQVEIQQLRITQDWHEVTDEWEQRGNWVFLDLVEEQKRNLFVAVSAKQIWYDVRTKREFGMVREWTCNVKYLWRDLVMEVVNDYLSLTVKEVISALNLPRTPLNEALERDSVEAMTSVDKEIVVQKEPGPLVKESLPELQKEISPYVACNVVSDAICFEGSRENGSSTRLRSNYWKPLEMCEVELCPDAVREYLLASNPAIRALWKEKLQKHLVCLGWKIEYNVPDQQGQKFYLSLIKVCRDMEKDPNMNSSWLQNDRCKIDATLDCHLPVSAVSLNSSENVQNPDIYPPTVLPSPPVENEAAEDVPDFCTKAFEICGVMENDPNTNSSQLQNDPTVDCHLTVVPLSPSENIQNPDIFTPLVEDEVEDVPEFCPGAVEQYYRLHISKESRVEKRRWILKAKNHLLAEGWIFDYPLPTHKKRGIIYISPQNRRFSTLHAACRFSMEKGISKLAISGTEGVKEENVDLVCSGELVCRPSQLLPKDFDSQTVNGGAASRPAGNQKRKSLRDSKANIPKCQSNGLPLRVLRSKKRVQKVSAPSLLPHKPLNVLSCLIDNSIILPRCKVYYKAKGRYRNVRTLAEGKITRDGIKCNCCLAIYSFVGFENHASGSSTRRPSASIFLEDGRSLLDCQIQMMHEHKTKETSGKAFSGLFPAENDYICSVCHYGGELILCDKCPSSFHKTCLGLEDIPNGDWFCPSCCCGICGRRKIDGDEVGNFLICIQCEHKCKRVGECKQKGTMAVSSDRSSTMIFILAQEQSSIKRCFIHEGLHKLLGESVSVGVDNLTWTLVKFINPDSCEPGSSESDLLAESYSKLNLALSVMHECFEPLKESFTSRDLVEDVIFSRWSELNRLNFQGFYTVLLERNEELISVATVRVYGKKVAEIPLVGTRLQYRQQGMCRILLKELEKELTQLGVERLVLPAVPSVLETWIRSFGFAKMTNLERYQFLDYIFLDFQGAIMCQKLLTNNPYPDPILLVESQPRCDVSSGSCCVNFSKSSSVCEEIDERAIMDQQMKDTCVGITDQVTTDSVTMTMVLNDQVSGATDSVTMRVEQPIHGDQRCLNGITGSECSTNKQVERNNDPYKFYTRRKVRNVI 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2245 1241 MobiDBLite consensus disorder prediction 632 656 - -
Aed4g2245 1241 SUPERFAMILY FYVE/PHD zinc finger 801 852 IPR011011 -
Aed4g2245 1241 CDD NAT_SF 1006 1066 - -
Aed4g2245 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 799 898 IPR013083 -
Aed4g2245 1241 SMART PHD_3 805 846 IPR001965 -
Aed4g2245 1241 Pfam Agenet domain 26 99 IPR008395 -
Aed4g2245 1241 SMART agenet_At_2 106 163 IPR014002 -
Aed4g2245 1241 SMART agenet_At_2 20 102 IPR014002 -
Aed4g2245 1241 Gene3D - 965 1110 - -
Aed4g2245 1241 Pfam Tify domain binding domain 728 780 IPR032308 -
Aed4g2245 1241 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 5 262 - -
Aed4g2245 1241 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 515 1163 - -
Aed4g2245 1241 Pfam PHD-finger 805 847 IPR019787 -
Aed4g2245 1241 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 950 1100 IPR000182 GO:0016407
Aed4g2245 1241 PANTHER PHD ZINC FINGER PROTEIN 5 262 - -
Aed4g2245 1241 PANTHER PHD ZINC FINGER PROTEIN 515 1163 - -
Aed4g2245 1241 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 974 1095 IPR016181 -
Aed4g2245 1241 ProSiteProfiles Zinc finger PHD-type profile. 803 848 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2245 Aed-Chr4 25100036 25108886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2245 31 382 PHD Transcription Factor Family AT5G58610 35.789 5.34e-61 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed4g2245 Agenet 6.1e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2245 - - ccaj:109815079 1426.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2245 4 25100036 25108886 Aed4g2245 4 25100036 25108886 ECH
Aed4g2245 4 25100036 25108886 Aed3g1850 3 22926948 22933327 PCT