Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2242 ATGATACTTAGAAGAAGACCCGCCAAACTCGACATTCCCGTCGCTTCTCTCGCTTTAGCGGTCTCGCCGGCCACGCCGTCGCCGGCCAGAGACGCCGTCGTCGAGGTCGATGGACGTGGCTTTTCCGTCTTTTGCAAACGAGGAAGGAGGCACCACATGGAGGACCGTTTCTCCGCTGCCGTTGATCTTCACGGTCAACCAAAACAGGCATTTTTCGGGATATTTGATGGTCACGGGGGCACAAAGGCTTCGGAATTTGCTGCACATAACTTGGAAAAGAATGTGTTGGATGAGGTGGTTAGAAGAGATGAGTGTGACATTAAAGAGGCAGTGAAGCATGGTTACCTGAACACAGATTCTGAATTCTTGAAGAAGGAGGATCTTAATGGTGGTTCTTGCTGTGTCACAGCGTTGATTAGGAATGGTAACCTTGTTGTGTCCAATGCTGGTGATTGTCGTGCTGTAATTAGCAGAGGGGGTGTGGCTGAAGCCCTAACATCTGATCACAAACCTTCTAGGGAAGATGAAAGGGACAGAATTGAGACTCGGGGTGGCTATGTTGATGTGTGCCGTGGTGTTTGGAGGATACAAGGATCACTGGCTGTTTCTAGGGGAATTGGAGATAGAAACCTGAAAAAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAGCCTCACCATGACTTGTTGATCTTAGCTTCAGATGGATTATGGGAAAAGGTTAGCAATCAGGAAGCAGTAGATATTGCTCGTCCTTGTTGTGTAGGGAACAATGGACAATTACAACCTTTGCTGGCTTGCAAAAAGCTCGTGGAATTATCTGTGTCACGAGGCTCTGTGGATGATATAAGTGTTATGATTATCAAATTGCAAAACTATATTTGA 894 0.4653 MILRRRPAKLDIPVASLALAVSPATPSPARDAVVEVDGRGFSVFCKRGRRHHMEDRFSAAVDLHGQPKQAFFGIFDGHGGTKASEFAAHNLEKNVLDEVVRRDECDIKEAVKHGYLNTDSEFLKKEDLNGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHKPSREDERDRIETRGGYVDVCRGVWRIQGSLAVSRGIGDRNLKKWVIAEPETKVLKIEPHHDLLILASDGLWEKVSNQEAVDIARPCCVGNNGQLQPLLACKKLVELSVSRGSVDDISVMIIKLQNYI 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2242 297 SMART PP2C_SIG_2 51 293 IPR001932 -
Aed4g2242 297 ProSiteProfiles PPM-type phosphatase domain profile. 40 293 IPR001932 -
Aed4g2242 297 CDD PP2Cc 39 293 IPR001932 -
Aed4g2242 297 PANTHER PROTEIN PHOSPHATASE 2C 3 296 IPR015655 GO:0004722|GO:0006470
Aed4g2242 297 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 3 296 - -
Aed4g2242 297 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Aed4g2242 297 Gene3D - 40 296 IPR036457 -
Aed4g2242 297 Pfam Protein phosphatase 2C 41 286 IPR001932 -
Aed4g2242 297 SUPERFAMILY PP2C-like 41 295 IPR036457 -
Aed4g2242 297 SMART PP2C_4 26 291 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2242 Aed-Chr4 25053969 25055986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2242 1 297 PP2C-type Phosphatase Gene Family AT2G30020 66.885 3.97e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2242 K17506 - gmx:100813073 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2242 4 25053969 25055986 Aed4g2242 4 25053969 25055986 ECH
Aed3g1854 3 22964916 22967022 Aed4g2242 4 25053969 25055986 ECH
Aed4g2242 4 25053969 25055986 Aed3g1854 3 22964916 22967022 PCT