Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2241 ATGGGTTCTTCTTGGATAAGAGGCAAGTGCATAGGTAAGGGTGCGTTTGGCACCGTCAGCATTGCGTTTCGCAAACGCGACGGTGGGGTTTTCGCGGTAAAGTCCGTGGGTTTAAAAACGGGTCTCCCGGGTCAGCTTGAGGCATTGGAGAACGAGATTCGGATCCTCCAGCGCATGTCCTCGCCGCACGTGGTAACCTTCCTCGGCGACGACGCCACGTGCGAGCAGCGGAACCTTCACTTGGAGTACCTGCCATGTGGCACGCTCGCTGACCTGGACGCTGACGTGGACGAAATATTAGTGAGACGCTACGCGTGGTGCCTGGTGAGCGCTCTGAAGCACGTGCATGCGAACGGCGTCGTTCACTGCGACGTGAAGGGGAAGAACGTCCTCGTCGGAGACGGAGGTGAGGGTGGCAGTTGCAAGCTCGCCGACTTCGGTTCGGCGGAGGAGTTCTCCGGCGGGGGCTTTCCGGCTGTGGTACCTCGCGGGAGTCCTCTGTGGATGGCGCCGGAGGTGATTCGCCGGGAGTGGCAGGGTCCGGCGTCGGATGTGTGGTCGTTGGGTTGCACCGTGATCGAGATGATCACCGGAAAACTGCCGTGGGAGGGGAACGCCGTCGACGCGCTGAGTCGGATCGGATTCTCCGGCGACGTGCCGGAGTTTCCGAAGCGGTTGTCGGAGCTCGGGAGGGATTTTGTGGAGAAGTGTTTGAGGAGGGAACCGTGGCGGCGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTCTTGTTGCCGTGTGGTGAGATTGTGGAATCGTCGCCACGGTGTGTTCTTGACCGAGTTGACTCGGAGTTCGACGACGATGAAGAAGAAGAAGAGGAAATGAGAATTGAAACTGAAACTTCGGCGAGGGGTAGAATTGGTAAATTGGCGATGAGCGTAAGGGCAAATTGGGAAACGCAAGGTTGGGAGGTGGTGAGGGAGGTGGCTGCTGATGCGGAACTGACGATGGCGGTTGACATTTGCGAGGACGTTAAAGAAGAGACGAATTCGGAAAATTTTGAGATTACGAGGGTAGAACAGGGAATTCATGTAGGGGCAAATTTAGAATGGTTGGGTGGGAGGGGTTGCAAGTGCAACTGCAACTGCAACTGCAGGGAGAGTGAAGCTGGTTGGACTTGGAAGTCACAAGACATGCATGATAGGCAGCACTGTGGAGATTTGGCAGTGAGATCGCACGGGTGGATTTGGCTTCACCATGTACCCTACATGTTCTGGTTGAAATCAGGCATGGAGGTATGGGACCAAGAGTTGCAAGAGGCTGTTGCTGGCAATGACAAGGATTCAAAATCTTATTTGTTTTGCATCAATGCTGGACAGGTTACATCAAAGATGCATGTCATTGTCATTGAACTTGGTGCCCAGCCAGAAATATTTTGGAAAGTATGGACTCTGACCTCTGGGAGAAAGTTCTTGATCTTCAGAATAACTGATCAAGTGGTGTCTACTGCTTTGACTGAAAGCAAGAGTCCTGAACAAGTTTCAGCTGCGGTGAAAGCTTTTATGACTGCCAATCATCCTCATGATTCATGA 1575 0.5384 MGSSWIRGKCIGKGAFGTVSIAFRKRDGGVFAVKSVGLKTGLPGQLEALENEIRILQRMSSPHVVTFLGDDATCEQRNLHLEYLPCGTLADLDADVDEILVRRYAWCLVSALKHVHANGVVHCDVKGKNVLVGDGGEGGSCKLADFGSAEEFSGGGFPAVVPRGSPLWMAPEVIRREWQGPASDVWSLGCTVIEMITGKLPWEGNAVDALSRIGFSGDVPEFPKRLSELGRDFVEKCLRREPWRRWSCDQLLQHPFLLPCGEIVESSPRCVLDRVDSEFDDDEEEEEEMRIETETSARGRIGKLAMSVRANWETQGWEVVREVAADAELTMAVDICEDVKEETNSENFEITRVEQGIHVGANLEWLGGRGCKCNCNCNCRESEAGWTWKSQDMHDRQHCGDLAVRSHGWIWLHHVPYMFWLKSGMEVWDQELQEAVAGNDKDSKSYLFCINAGQVTSKMHVIVIELGAQPEIFWKVWTLTSGRKFLIFRITDQVVSTALTESKSPEQVSAAVKAFMTANHPHDS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2241 524 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Aed4g2241 524 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 348 - -
Aed4g2241 524 SMART serkin_6 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2241 524 Gene3D Transferase(Phosphotransferase) domain 1 3 320 - -
Aed4g2241 524 SUPERFAMILY Protein kinase-like (PK-like) 4 258 IPR011009 -
Aed4g2241 524 Pfam Protein kinase domain 8 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2241 524 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 348 - -
Aed4g2241 524 Coils Coil 272 292 - -
Aed4g2241 524 CDD STKc_MAPKKK 4 257 - -
Aed4g2241 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Aed4g2241 524 ProSiteProfiles Protein kinase domain profile. 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2241 Aed-Chr4 25045370 25048343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2241 5 343 MAP Kinase Kinase Kinase AT2G30040 60.172 3.04e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed4g2241 Pkinase 2.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2241 - - gmx:100818366 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2241 4 25045370 25048343 Aed4g2241 4 25045370 25048343 ECH
Aed3g1856 3 22989665 23002995 Aed4g2241 4 25045370 25048343 ECH
Aed4g2241 4 25045370 25048343 Aed3g1855 3 22977076 22978660 PCT