Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2236 ATGTCTTCTGATGAACAGCACCACTTCATTCAGTGGCACTTGAACAAGCTCAATGCTTCAACTTCAACTTTTCACTCCTCCTATAGCCAAAGCCTCTTCCTATTGCTATGGTTTCTCGCCGTTATTATCTTTGTCCCTTCATTGTTCTTGTGCATCCATTTGTGTCGCCGTCGCTTCTCACAACAACGACAAGTAATTAGGTCCACCGCAACAACTGTGGTCTCTCCTACTACTATGGTGCCATCTTCAACTAGCGTGGTTGGTGCAGGTTTTGAAAAAGAGGAATGTTGCATATGTTTGAGTCTCTTCCAAGGTGATGAAAAATTGAAGGTGCTAATTGAATGTCAACATGTGTTCCATTCTGAGTGCTTGGACTTGTGGCTTAGTGCACATCCTAGTTGCCCTCTCTGCAGAGCCTCCCTCCATGTTAGACAAAATCTCAAAAAATGA 450 0.4356 MSSDEQHHFIQWHLNKLNASTSTFHSSYSQSLFLLLWFLAVIIFVPSLFLCIHLCRRRFSQQRQVIRSTATTVVSPTTMVPSSTSVVGAGFEKEECCICLSLFQGDEKLKVLIECQHVFHSECLDLWLSAHPSCPLCRASLHVRQNLKK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2236 149 SMART ring_2 96 137 IPR001841 -
Aed4g2236 149 Pfam Ring finger domain 95 138 IPR001841 -
Aed4g2236 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 144 IPR013083 -
Aed4g2236 149 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 143 IPR044675 -
Aed4g2236 149 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Aed4g2236 149 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 143 - -
Aed4g2236 149 SUPERFAMILY RING/U-box 90 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2236 Aed-Chr4 25008492 25008941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2236 90 141 Rapid Response to Elicitors AT3G05200 53.846 2.95e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2236 - - gmx:102667569 225.713