Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2216 ATGGCCGCAGCTTTGGAGTGCTGGTCGCGCCGCGCCACCACCATCGACGAGGACCACGCGGTCCTCATCATGCAGAGACCCCAACAGGACCCACCACCACCCAGAGACTCTTCTTCTTCTTCTTCACTCGTCCACAAGAAGCTCCAGAAGTTCACGCGCAACGTCTCCGAGGCCATTGCTTCCCTCAAAAACTCCCTCAACAGCACCATCAACGTCGAATCCTCCAAACCCGACGCGCCTCGCAGCCTCGTGTGGACCACCGTCCTGCGCAACCTCACACACCTCTACCCCGGTTCCCAGCTCCCCGAGAAGCTAGTGTGCAACATTCGCAAGCACTACGATTCCTTGCCTCTCAGTTATTCTCAGGCAGGGTTTGATGTGAAAGATGTGTTTCTTCACATGAAGCTGATGGAGCAAGCTTTGGAGGATGATCAGGCTGCAATTTTGATTCAAGAGGAGTACTGTGATGGTGAGATTCAGCTTCAGGGGTCTTTGTTCAAGTTGACATTTTCTTGCAACTCTCCAATTTCGTGGCCTGCGATGTCTGGTGCATTGGATAGTTACTCCATTTGCTGCAAGAAGATTCAGATCTTTGAGAAGAAAGGTTTTACCCTTGGGATTGTGCTTCTTCTTGTGCTGTCTGGTGGTGGGCAAGATAAGTTGGTCAGGACCCGGGTTGAAAGCGCTCTCAAGATTGCCGTCAAGAGGCCCAAAGCCGGTGGCGTGAAGCTGCCCTTTGGGCTTTGTGGATGTCAAGAGGAGAACTCCAAGGGGAGAGGACTTGGAGAGATTGAAGATGGTGGGGATGCGTATTGTGGAAATGGATTTGAGAATTTGAGCCAAAAGATTGTGCTTCAAGTTCCATTGCCTAGTTCATCTTTTCTTGTAGTGGTGGATGAATGGCAGACTATTCAGTCAGGTGGGGATGAGATTGAAAAATGGTTGTTGAACTCGGATAGTCTTGAGTTTGTAGAACAGATTGGGCCCAATTCGTATAAGGGGACGTACATGGGGAAAAAGGTTGGCATTGAGAAGCTTAGAGGATGTGAGAAAGGGAACTCTTATGAGTTTGAGCTCAGGAAAGATCTGCTGGCACTGATGACTTGTGGGCACAGAAATATTATGCAGTTTTGTGGTGTTTGCATAGATGAGAACCATGGGTTATCTGTAGTGACAAAATTTGTGGAAGGTGGATCTGTTCATGACTTAATGTTAAAGAACAAGAAACTTTCGAGTAAGGATGTTGTAAGAATTGTAGTTGATGTAGCTGAGGGGATCAAGTTTATGAATGATCACGGTGTTGCATACAGAGATCTTAATACGCAGAGGATTCTGTTGGATAAGCATGGGAATGCTTGCTTGGGTGATATGGGCATTGTCACCGCCTGCAAGAGTGTTGGAGAGGCAATGGATTATGAAACTGATGGTTATCGATGGCTAGCACCAGAGATAATTGCTGGTGACCCAGAGAGTGTGACAGAGACATGGATGAGTAATGTTTATAGTTTTGGCATGGTAATTTGGGAGATGGTAACTGGTGAGGCAGCATATTCTGCATTTTCACCAGTTCAAGCAGCTGTTGGCATTGCTGCTTGTGGCCTAAGACCTGAAATTCCCAAGGACTGTCCTCAAACTCTAAAGTCTCTCATGACGAAGTGCTGGAACAACACCCCTTATAAACGCCCCCACTTCTCAGAAATTTTGGCCATTTTGCTGCGACCAAACAACTACAATAGGTAA 1740 0.4741 MAAALECWSRRATTIDEDHAVLIMQRPQQDPPPPRDSSSSSSLVHKKLQKFTRNVSEAIASLKNSLNSTINVESSKPDAPRSLVWTTVLRNLTHLYPGSQLPEKLVCNIRKHYDSLPLSYSQAGFDVKDVFLHMKLMEQALEDDQAAILIQEEYCDGEIQLQGSLFKLTFSCNSPISWPAMSGALDSYSICCKKIQIFEKKGFTLGIVLLLVLSGGGQDKLVRTRVESALKIAVKRPKAGGVKLPFGLCGCQEENSKGRGLGEIEDGGDAYCGNGFENLSQKIVLQVPLPSSSFLVVVDEWQTIQSGGDEIEKWLLNSDSLEFVEQIGPNSYKGTYMGKKVGIEKLRGCEKGNSYEFELRKDLLALMTCGHRNIMQFCGVCIDENHGLSVVTKFVEGGSVHDLMLKNKKLSSKDVVRIVVDVAEGIKFMNDHGVAYRDLNTQRILLDKHGNACLGDMGIVTACKSVGEAMDYETDGYRWLAPEIIAGDPESVTETWMSNVYSFGMVIWEMVTGEAAYSAFSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWNNTPYKRPHFSEILAILLRPNNYNR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2216 579 ProSiteProfiles Protein kinase domain profile. 321 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2216 579 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 575 - -
Aed4g2216 579 Gene3D Transferase(Phosphotransferase) domain 1 314 575 - -
Aed4g2216 579 SUPERFAMILY Protein kinase-like (PK-like) 301 571 IPR011009 -
Aed4g2216 579 PANTHER SERINE-THREONINE PROTEIN KINASE 1 575 - -
Aed4g2216 579 PRINTS Tyrosine kinase catalytic domain signature 542 564 IPR001245 GO:0004672|GO:0006468
Aed4g2216 579 PRINTS Tyrosine kinase catalytic domain signature 498 520 IPR001245 GO:0004672|GO:0006468
Aed4g2216 579 PRINTS Tyrosine kinase catalytic domain signature 392 405 IPR001245 GO:0004672|GO:0006468
Aed4g2216 579 PRINTS Tyrosine kinase catalytic domain signature 428 446 IPR001245 GO:0004672|GO:0006468
Aed4g2216 579 Pfam Protein tyrosine and serine/threonine kinase 353 570 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2216 Aed-Chr4 24845455 24849557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2216 304 571 MAP Kinase Kinase Kinase AT2G17700 31.868 1.93e-49 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Aed4g2216 PK_Tyr_Ser-Thr 5.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2216 - - gmx:100811417 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2216 4 24845455 24849557 Aed4g2216 4 24845455 24849557 ECH
Aed4g2216 4 24845455 24849557 Aed3g1873 3 23126857 23132243 PCT