Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2209 ATGGGGGGTACCTCACCTTGTGCTTCTTGCAAGTTGTTGAGACGCCGTTGCTCCAAGGAATGCATCTTTGCTCCTTACTTTCCTTCTGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTTTTTGGTGCTAGCAATGTCAGCAAAATGCTGCAGGAGCTTCCAATTAATCAAAGAGCAGATGCTGTGAACAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCAGTATATGGATGTGTTGGAGCCATATCATACCTACAAAGCCAGGTTTCACAGTTGCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATTCTATGCATCCAGATGCAGCAACAGGACCCTACCACCTTAGCCACACAACTAGACCAAGATGACAAATCAATGCTCCTATCTGCAGTAAACAATATTAATAACTATGATATGCTTCCTCATCATCACTATCTTAACTTTCCTTCATCTTCTTCCTCATCTTCCAATGTATTCCAAGACCCTCATGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTAA 534 0.4326 MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPINQRADAVNSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQQDPTTLATQLDQDDKSMLLSAVNNINNYDMLPHHHYLNFPSSSSSSSNVFQDPHEPLKRESFWT 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2209 177 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Aed4g2209 177 Coils Coil 85 105 - -
Aed4g2209 177 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 2 174 - -
Aed4g2209 177 MobiDBLite consensus disorder prediction 158 177 - -
Aed4g2209 177 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Aed4g2209 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2209 Aed-Chr4 24792860 24793658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2209 3 177 AS2 family AT2G30130 66.316 3.62e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed4g2209 LOB 2.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2209 - - gmx:100819419 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2209 4 24792860 24793658 Aed4g2209 4 24792860 24793658 ECH
Aed4g2209 4 24792860 24793658 Aed3g1882 3 23192113 23192734 PCT