Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2196 ATGACCACTTCTTTCTCTGACCTTCTTTCTTCTTCTTCTTCTCCGACCACCGACCGCAACCTCGGAGGCTCCGAATTAAGACCACATGAGTCGTCGGATCAAACAGCAGGTGGTTCTGATGGTGGTGTGCCAGCAAGATTCAAGTCCACAGCTCCTCCATCTCTTCCTCCAGTACCCATTTCTCCTTCTTCTTACTTCAACTTTAACATCCCTCATGGGTTAAGCCTTGCTGAACTTCTTGACTCCCCAGTTCTCCTTAACTCTTCCAACGTTTTGCCATCTCCAACAACTGGATCATTTGCTGGTCAAGGCTTCAATTGGAAGAGCAGTTATGGGGAAAGCCAGCAGCATGTCAAAGAAGAAGCCAAGAACTTCTCAAATTTCTCCTTCCAAACACAAACACGCCCTCCTCTTCCATCTTCAACTGGCTTAGTTCAAACCGGATGGAGTTTTCCGGAAACTGCTAATAAACAAGATGGTTTTCCTTCAAGAATGAGTATGAGTATAGTGAAAACTGAAACCACTTCTGCGATGCATAGTTTCAACCCTGATCAGAATAACCACAGGAATGGTTTTCATCAATCAGATCATAATAACAATCACCAACCACCACAAGTTCAGACCTTGAGCAGAAGATCAGATGATGGGTACAATTGGAGAAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCCACTTGTCCAACAAAGAAAAAGGTTGAGAGATCCTTAGATGGACAAATTACTGAGATTGTTTACAAAGGAAGTCATAACCATCCCAAGCCTCAGGCTGCCAATAAGAGGAACTCATTGTCACTTGCAATTCCTCATTCAAATCATGGCAGCAATAATAATGAAATACAACATCAAATAAATATGGATTCGGTTGCCACATCAGAAAACTCATCAATTTCAATGGAGGATGAGGATTTTGATCATAGTAGACCAGGAGGAGATAATGAGTTTGATAATGAGGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATATCAGCTGTGGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGATGGAGGAAATATGGGCAGAAAGTGGTCAAGGGAAATCCAAATCCAAGTACTAACAGTTCTCTTCAGAATCTTAGAGCACCAGAAAGGCCATCATCACACTTCAACCCTAATATGCAGCAGAACTCAGGAAGTTTTAATGGATTCTCATCAGGGTATGGAAATCTGTTCATGGGGTCTTACATGAATCAGCAATCTGCCAACAATAATAATGTTTTCACCACTAGAGCCAAGGAGGAGCCTGCAGAAGATGACTCGTTTCTTGACTCTTTGCTATGTTAA 1419 0.4214 MTTSFSDLLSSSSSPTTDRNLGGSELRPHESSDQTAGGSDGGVPARFKSTAPPSLPPVPISPSSYFNFNIPHGLSLAELLDSPVLLNSSNVLPSPTTGSFAGQGFNWKSSYGESQQHVKEEAKNFSNFSFQTQTRPPLPSSTGLVQTGWSFPETANKQDGFPSRMSMSIVKTETTSAMHSFNPDQNNHRNGFHQSDHNNNHQPPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPTCPTKKKVERSLDGQITEIVYKGSHNHPKPQAANKRNSLSLAIPHSNHGSNNNEIQHQINMDSVATSENSSISMEDEDFDHSRPGGDNEFDNEEPDAKRWRIEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPSTNSSLQNLRAPERPSSHFNPNMQQNSGSFNGFSSGYGNLFMGSYMNQQSANNNNVFTTRAKEEPAEDDSFLDSLLC 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2196 472 SMART WRKY_cls 375 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 SMART WRKY_cls 213 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 396 IPR044810 GO:0003700
Aed4g2196 472 MobiDBLite consensus disorder prediction 1 38 - -
Aed4g2196 472 Gene3D WRKY domain 362 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 MobiDBLite consensus disorder prediction 196 213 - -
Aed4g2196 472 Gene3D WRKY domain 200 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 MobiDBLite consensus disorder prediction 390 422 - -
Aed4g2196 472 MobiDBLite consensus disorder prediction 387 422 - -
Aed4g2196 472 ProSiteProfiles WRKY domain profile. 214 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 SUPERFAMILY WRKY DNA-binding domain 212 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 MobiDBLite consensus disorder prediction 1 58 - -
Aed4g2196 472 MobiDBLite consensus disorder prediction 305 337 - -
Aed4g2196 472 Pfam WRKY DNA -binding domain 376 396 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 Pfam WRKY DNA -binding domain 214 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 29 396 - -
Aed4g2196 472 SUPERFAMILY WRKY DNA-binding domain 367 396 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 ProSiteProfiles WRKY domain profile. 370 395 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g2196 472 MobiDBLite consensus disorder prediction 178 217 - -
Aed4g2196 472 MobiDBLite consensus disorder prediction 316 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2196 Aed-Chr4 24704065 24706929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2196 60 409 WRKY Transcription Factor Family AT2G38470 42.005 6.66e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed4g2196 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2196 K13424 - gmx:100127397 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2196 4 24704065 24706929 Aed4g2196 4 24704065 24706929 ECH
Aed4g2196 4 24704065 24706929 Aed3g1905 3 23344230 23348388 PCT