Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2184 ATGGAGATATCATTGTTAAAAATGATCGTAAATGGCATATCCTCATTTTTGCATTTATCTTTTTCTGAAAACATGAACTCTGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAGATACTCAAGTTGTTGAAGCCAATCATTGATGCGAGTGTTAAGTCCGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATTGGTCTTGCTGTTAATGAATTAAAGGAACATGTTGAGAACTGGCACCCATTGTCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCTTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGATTCTGACCATTGTCTCCCTGATGAATTAAGTGCTGAACATTTACAGCACTGTTCACAGAAACTTAAGCTTTTGGGACATGAAGAAACCTCACCAGTCATTCAGGAAGCTATTACAGAACACCTGGAAAATGTAGGACCCAGTTCAGAGCTCCTGACAAAAATTGCTGATAGCCTGGGCCTAAGGTCTAATCAGGAGGTTCTTATTGAGGCAGTGGCCCTGGAAAGGTTGAAGGAAAATGCTGAACAAACTGAAAAGACTGCTGAAGCTGAATTCATTGATCAAATTATTGTTGTTGCAACACGTATGCACGAGCGTCTTGTTATGCTTAAACAAGCCCAGAGTAGCAGCCCAGTTCCAATACCTTCTGATTTTTGTTGTCCTCTCTCTTTGGAGTTGATGACTGATCCAGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCATACTCTGGTTCATACCAACCTAATACCTAATTATACTGTAAAAGCACTAATTGCAAATTGGTGTGAATCAAACAATGTGCAACTAGTTGATCCCACAAATTTAAATCAAGCATCTGTCCTTCATGGGTTTATGGAATCTGGTACAACCAGGGAATCACCTGTTTTTGCTCATTCCAGGACCAACCAGCCATCCTCACCTGAGTCAGCACGTTCTCATTCTTTTAGTTCACCAGGTAATAACCTAACTTCTGGTGGAATTCAGCGAGAGGGAACATCACCTTTGCATCCTCGTTCAACTTCAGAAGGCTCCTTAAATGGTATGGTTAATGGGCAATATATGGATCTTGCAAGAATATCTCCTGCAGGTTTGGATGACAGGTCTGCTAGTTCAGATGAAAGCAGTGTGGATTCAGCTAGCCAACCATCAATGTCACCATCTAGAAGGGAGTCTTCCAGTGCTTTTAGCTCTGAACAATCTCAAACTCATATTAGAGCTGTTTCTGATTCCAGTGCACTTTCTACTGCAAATTTTCCTCAAGAAACACAAGGTGATGACAACAATGCTCCTCAGCTGTCAACAAGTGCAGGCCACAGTAGAGAAGCTTCTGGTGAATTAAATCAAGGGCCAGAAACTGCTGGTACTACTGCTGTGCCATTGGTGCATAGAGAACCTGAGTTCCCACCCCGATTGGAGACAAGGTCTCGAAGTCAAGCCATTTGGAGGCGGCCATCGGAGAGGCATGTTCCTAGGATAGTATCTTCTCCTGTTGTTGAAACAAGAGCTGATCTTTCTGCTATTGAAACCCAGGTTTGGAATTTGGTTGAGGGCTTGAATAGCTCTGATATTGATACTCAGAGAGAGGCAACATCAGAACTCCGCCTTCTTGCAAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAACCATTAACATATTAGTTGATTTACTTCGATCAACTGATACAACGATCCAAGAAAATGCTGTTACTGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTTATGTGCTTGAGACTGGGAGCCCAGAAGCAAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCTGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGAGCTATTGGACCACTGGTAGAATTATTGGGAAATGGAACCCCAAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGATTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTTGCGACAATTCCAGAAGGAAGAAATGCAATTGGTGATGAAGGTGGGATTCCTGTTCTGGTCGAGGTTGTTGAGTTGGGTTCTGCAAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACATCTTTGCTTATATAGTACTAAATTTTTAAGCAAGGTGCTTCAACAAGGAGCTGTCCCACCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTTAATCAATTTAGAAATCAAAGACATGGGAGTGCTGGGAGGGGCTGA 2508 0.4238 MEISLLKMIVNGISSFLHLSFSENMNSEPVSKYYQKAEEILKLLKPIIDASVKSELASDEVLNKILEEIGLAVNELKEHVENWHPLSSKVYFVMQVEPLISRIRTSGLNIFQQLKDSDHCLPDELSAEHLQHCSQKLKLLGHEETSPVIQEAITEHLENVGPSSELLTKIADSLGLRSNQEVLIEAVALERLKENAEQTEKTAEAEFIDQIIVVATRMHERLVMLKQAQSSSPVPIPSDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRHTLVHTNLIPNYTVKALIANWCESNNVQLVDPTNLNQASVLHGFMESGTTRESPVFAHSRTNQPSSPESARSHSFSSPGNNLTSGGIQREGTSPLHPRSTSEGSLNGMVNGQYMDLARISPAGLDDRSASSDESSVDSASQPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSTANFPQETQGDDNNAPQLSTSAGHSREASGELNQGPETAGTTAVPLVHREPEFPPRLETRSRSQAIWRRPSERHVPRIVSSPVVETRADLSAIETQVWNLVEGLNSSDIDTQREATSELRLLAKHNMDNRIAIANCGTINILVDLLRSTDTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIYVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVDLMDPAAGMVDKAVAVLANLATIPEGRNAIGDEGGIPVLVEVVELGSARGKENAAAALLHLCLYSTKFLSKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRNQRHGSAGRG 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2184 835 Gene3D - 729 831 IPR011989 -
Aed4g2184 835 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 831 - -
Aed4g2184 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 316 IPR013083 -
Aed4g2184 835 SUPERFAMILY RING/U-box 226 313 - -
Aed4g2184 835 PANTHER U BOX DOMAIN-CONTAINING 7 831 - -
Aed4g2184 835 MobiDBLite consensus disorder prediction 337 389 - -
Aed4g2184 835 MobiDBLite consensus disorder prediction 408 495 - -
Aed4g2184 835 Pfam Armadillo/beta-catenin-like repeat 622 661 IPR000225 GO:0005515
Aed4g2184 835 Pfam Armadillo/beta-catenin-like repeat 583 620 IPR000225 GO:0005515
Aed4g2184 835 Pfam Armadillo/beta-catenin-like repeat 665 702 IPR000225 GO:0005515
Aed4g2184 835 MobiDBLite consensus disorder prediction 506 520 - -
Aed4g2184 835 SMART arm_5 581 621 IPR000225 GO:0005515
Aed4g2184 835 SMART arm_5 663 703 IPR000225 GO:0005515
Aed4g2184 835 SMART arm_5 622 662 IPR000225 GO:0005515
Aed4g2184 835 SMART arm_5 704 743 IPR000225 GO:0005515
Aed4g2184 835 SMART arm_5 744 784 IPR000225 GO:0005515
Aed4g2184 835 MobiDBLite consensus disorder prediction 404 520 - -
Aed4g2184 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 715 756 IPR000225 GO:0005515
Aed4g2184 835 Coils Coil 179 209 - -
Aed4g2184 835 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Aed4g2184 835 Gene3D - 543 623 IPR011989 -
Aed4g2184 835 Gene3D - 624 728 IPR011989 -
Aed4g2184 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 674 716 IPR000225 GO:0005515
Aed4g2184 835 SUPERFAMILY ARM repeat 554 824 IPR016024 -
Aed4g2184 835 CDD RING-Ubox_PUB 240 281 IPR045210 -
Aed4g2184 835 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Aed4g2184 835 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Aed4g2184 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 592 634 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2184 Aed-Chr4 24626124 24631885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2184 196 835 U-box Gene Family AT2G23140 62.751 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2184 - - gmx:100811250 1462.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2184 4 24626124 24631885 Aed3g1924 3 23503251 23508075 PCT