Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2179 ATGCCGGAGATCGACCAGGCGGCGGCGGGGGACACCGCCCTGTTCGGAAAATACGAGCTGGGGCGCATACTCGGCTGCGGCGCGTTCGCGAAGGTGCACTACGCGCGCAACGTGCAGACGGGGCAGAGCGTGGCGGTGAAAATCATAAACAAGAAGAAACTGGCTGGAACGGGGCTTGCCGGAAACGTGAAGCGAGAAATAACGATCATGAGCAAGCTCCACCACCCCAACATCGTGCGCCTCCACGAGGTCCTCGCAACCAAAACCAAAATCTTCTTCATCATGGACCTCGTCCGCGGCGGCGAACTCTTCACCAAAATCTCCAAGGGTCGCTTCTCCGAGGATCTCAGCCGCCGCTACTTCCACCAACTCATCTCTGCTATCGGCTACTGCCACTCCCGCGGCGTCTTCCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGACGAGCACGGCGATTTGAGAGTCTCCGATTTCGGCTTGAGTGCCGTTCGAGACCAGATCCGACCCGATGGCTTGCTCCACACCCTTTGCGGCACTCCTGCTTACGTGGCACCCGAAATTTTAGGCAAAAAAGGTTACGATGGTGCAAAGGTTGACGTGTGGTCATGCGGCGTCGTTTTGTTCGTGCTCGCCGCGGGTTATTTACCGTTCAACGACCCGAATTTGATGGTAATGTACAAAAAAATCTACAAAGGCGAGTTCCGGTGTCCGCGATGGATGTCACCGGAGCTGCGGCGATTTTTGTCGAAGTTGCTTGACACCAACCCAGAAACGAGGATCACGGTGGAGGGCATGACCCGGGACCCGTGGTTCAAAAAGGGTTATAAAGAGATCAAATTTCACGAAGAGGATTACCATGCTTCCGGGTCGGGTTCGTTTTTCGGGCCCAAGGACGAGAGGATGGTGGATTTGAACGCTTTTGATTTGATTTGTTTTTCTTCGGGTTTGAATTTGTCGGGGATGTTTGGGGAAGAGGGTGATGAGGTGGAGGCGGGGGAAAGGTTAGTGACAAGGGAGTCGCCGGAGAGGGTTTTGGAGGCGGCGGAGCAGGCGGGCACGGCGGTGGGAATGGCCGTGCGGTGGAAGAAGGAATCTGGGGTGGAGTTGGAAGGGATTAACGGGAGGTTTGGGATTGCGGTGGAGGTTTACCGGCTCACGGCGGAGCTTGCGGTCGTCGAGGTCCGGAAGAGGGGCGGCGACGCCGCCGCGGCTGCGTTGAGGGGTGTGTGGGTGGAGAGGTTGATGCCTTTGTTGCTTGGGGGTGCAACCATGTCGTATAGTAATTGTAGTGAGGATCAACAACAACTAGAACAAGAACCTGAGTCGCAGGTTGCCGGTGACTGA 1347 0.5664 MPEIDQAAAGDTALFGKYELGRILGCGAFAKVHYARNVQTGQSVAVKIINKKKLAGTGLAGNVKREITIMSKLHHPNIVRLHEVLATKTKIFFIMDLVRGGELFTKISKGRFSEDLSRRYFHQLISAIGYCHSRGVFHRDLKPENLLLDEHGDLRVSDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILGKKGYDGAKVDVWSCGVVLFVLAAGYLPFNDPNLMVMYKKIYKGEFRCPRWMSPELRRFLSKLLDTNPETRITVEGMTRDPWFKKGYKEIKFHEEDYHASGSGSFFGPKDERMVDLNAFDLICFSSGLNLSGMFGEEGDEVEAGERLVTRESPERVLEAAEQAGTAVGMAVRWKKESGVELEGINGRFGIAVEVYRLTAELAVVEVRKRGGDAAAAALRGVWVERLMPLLLGGATMSYSNCSEDQQQLEQEPESQVAGD 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2179 448 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2179 448 Gene3D Transferase(Phosphotransferase) domain 1 10 296 - -
Aed4g2179 448 Pfam NAF domain 305 361 IPR004041 GO:0007165
Aed4g2179 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Aed4g2179 448 PANTHER - 1 441 - -
Aed4g2179 448 CDD CIPK_C 306 419 - -
Aed4g2179 448 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Aed4g2179 448 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2179 448 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 441 - -
Aed4g2179 448 SUPERFAMILY Protein kinase-like (PK-like) 15 281 IPR011009 -
Aed4g2179 448 Gene3D Kinase associated domain 1, KA1 302 420 - -
Aed4g2179 448 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Aed4g2179 448 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2179 Aed-Chr4 24592021 24594339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2179 1 401 CBL-interacting serine-threonine protein kinases AT2G30360 64.792 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aed4g2179 Pkinase 9.3e-69 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2179 4 24592021 24594339 Aed4g2179 4 24592021 24594339 ECH
Aed4g2179 4 24592021 24594339 Aed3g1933 3 23549467 23550768 PCT