Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2175 ATGATGCCAAATGCATGGTTTTATAAGCTCAAAGATATGAGCAAACCAAGGAAGAGAAATGGCCCTCATGTTATGAAGAACAAAGTAGCTTCACCAACAACATCTCAAAGGTCACAGTCACAGCCAAGATACTCGCATTATTTCTCCATTGAACCAAACATAGCTGGTAAGTTATACAACTCTCCTATTTTCTACACTAAACACTCAGATAACACATTCACTGATTCACCAAGAAGGTCATCCAAGAGAAGGGCTAAGAGAAAAACCATTTACAAGCCTTCTCCAACAATTGTGTCTTCACCAGTCATAGAAAGTTTTAGCTGTCATTCCTCAAACAAATGGATTAAGCCAAATCAACCTCAGTCTTCTGACTATTATCTCTCCTCCTTAGAGAGTTCTTCTTCTTCTTGTTCTGAATCAAACCTCAATGAATATGTTTCATCTGAGTCTGAGTGTGATAAGTTCACTATTCCTGACCTGCTTAATGGAGTAGCCTCTGAATGCAGTTGTAGAGTTAGCTCTTCCACCAATGACATCATCATTGACATGAAAAATGAATCCTTCACTGGAAATTCTGAAAACCTTGATGGGTTTGACACAATTTCACAATTAGGCCTTGCTCCAATATTAACAAAGCCAGTGAAGTTTGATGATGAGGTCATTGAAGCCACTGAGTTGAGAAGATCAACTAAATTTGATGAGCTAAAGTCTCATCAGTCTCTATCTGTCAAGGTTAGCAAAGAGGAAAGTAGTAGAACTAAGAGAGAGAGAAAAACAAGTCCAGTAGCTAGAATTTCCTCTGCTAATTCTACAGGTATAAAACTTAGAGTCAATTCTCCAAAACTTGCAAGCAGGAAAGTTCAAGCCTATGCAAGGAGGAGTGTGTCATCCAAAGCATGCAAGGCCTCAATGAATTCAGGCTTTCCAGAGGGATTTGCAGTTGTTAAGTCCTCACTTGATCCACAAAGAGACTTCAGGGATTCAATGGTGGAGATGATTGTGGAGAACAATATCCGCGCATCAAAAGAATTGGAGAATTTGCTTGCCTGCTATCTTTCACTGAATTCAAGGGAATACCATGATCTTATTGTCAAAGCATTTGAGCAAATTTGGTATGACATGGCTCAACTCAGAATGTAA 1140 0.3904 MMPNAWFYKLKDMSKPRKRNGPHVMKNKVASPTTSQRSQSQPRYSHYFSIEPNIAGKLYNSPIFYTKHSDNTFTDSPRRSSKRRAKRKTIYKPSPTIVSSPVIESFSCHSSNKWIKPNQPQSSDYYLSSLESSSSSCSESNLNEYVSSESECDKFTIPDLLNGVASECSCRVSSSTNDIIIDMKNESFTGNSENLDGFDTISQLGLAPILTKPVKFDDEVIEATELRRSTKFDELKSHQSLSVKVSKEESSRTKRERKTSPVARISSANSTGIKLRVNSPKLASRKVQAYARRSVSSKACKASMNSGFPEGFAVVKSSLDPQRDFRDSMVEMIVENNIRASKELENLLACYLSLNSREYHDLIVKAFEQIWYDMAQLRM 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2175 379 Pfam DNA-binding domain 1 39 IPR025830 GO:0003677
Aed4g2175 379 ProSiteProfiles OVATE domain profile. 314 373 IPR006458 -
Aed4g2175 379 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 2 378 IPR038933 GO:0045892
Aed4g2175 379 Pfam Transcriptional repressor, ovate 318 374 IPR006458 -
Aed4g2175 379 MobiDBLite consensus disorder prediction 13 43 - -
Aed4g2175 379 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 2 378 - -
Aed4g2175 379 MobiDBLite consensus disorder prediction 243 265 - -
Aed4g2175 379 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 312 374 IPR006458 -
Aed4g2175 379 MobiDBLite consensus disorder prediction 27 43 - -
Aed4g2175 379 MobiDBLite consensus disorder prediction 243 261 - -
Aed4g2175 379 MobiDBLite consensus disorder prediction 70 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2175 Aed-Chr4 24570380 24571519 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Aed4g2175 Ovate 5.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2175 - - gmx:100798120 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2175 4 24570380 24571519 Aed4g2175 4 24570380 24571519 ECH
Aed4g2175 4 24570380 24571519 Aed3g1938 3 23581961 23583103 PCT