Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2173 ATGGCACACCAGGAATTTTCCATTGCTCTTGTGACTCTCATTGTTCTCTTTATCAATATGAACCTCCAAGGTGCCACTGCTGACTATGGCGGTTGGGACAGTGCTCATGCTACTTTCTATGGTGGGGGTGATGCTTCTGGAACAATGGGTGGAGCATGTGGTTATGGAAATTTGTATAGCCAGGGCTATGGAACTGACACTGTGGCTCTAAGCACTGCTTTGTTCAACAATGGCTTAAGCTGTGGATCTTGCTATGAAATGAGGTGTGATGATGACCCAAGATGGTGCAAACCTGGCACTATTACTGTCACTGCTACTAACTTCTGCCCCCCAAACCCATCTTTGGCTAACAACAATGGTGGTTGGTGTAACCCTCCTTTGCAACACTTTGATATGGCTGAACCTGCCTTCTTACAAATTGCTGAATATAGAGCAGGAATAGTGCCTGTGGCCTTCAGAAGGGTTCCCTGTGCGAAAAAGGGAGGAATAAGGTTCACAATCAATGGCCACTCTTACTTCAACCTAGTTTTGGTGACCAATGTGGGTGGTGCTGGTGATGTGCATTCAGTGTCCATCAAAGGGTCCAAAACTGGGTGGCAACCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCTTACCTCAATGGGCAATCCCTCTCTTTTCAAGTCACCACAAGTGATGGAAGAACTGTGTCAAGCAACAACGTGGCACCAGCCAATTGGCAGTTTGGCCAAACCTTCCAAGGAGCCCAATTCTAG 765 0.4732 MAHQEFSIALVTLIVLFINMNLQGATADYGGWDSAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTVALSTALFNNGLSCGSCYEMRCDDDPRWCKPGTITVTATNFCPPNPSLANNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCAKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVSSNNVAPANWQFGQTFQGAQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2173 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Aed4g2173 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Aed4g2173 254 Gene3D - 161 254 IPR036749 -
Aed4g2173 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Aed4g2173 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Aed4g2173 254 Pfam Lytic transglycolase 67 151 IPR009009 -
Aed4g2173 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Aed4g2173 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Aed4g2173 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Aed4g2173 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Aed4g2173 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Aed4g2173 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Aed4g2173 254 Gene3D - 17 158 IPR036908 -
Aed4g2173 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Aed4g2173 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Aed4g2173 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Aed4g2173 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Aed4g2173 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Aed4g2173 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Aed4g2173 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Aed4g2173 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Aed4g2173 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Aed4g2173 254 PANTHER EXPANSIN-A15 4 254 IPR002963 GO:0009664
Aed4g2173 254 SMART dpbb_1 67 152 IPR007112 -
Aed4g2173 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Aed4g2173 254 PANTHER EXPANSIN 4 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2173 Aed-Chr4 24556290 24558819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2173 12 254 Expansin Gene Family AT2G40610 80.328 2.21e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2173 - K20628 gmx:100777044 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2173 4 24556290 24558819 Aed4g2173 4 24556290 24558819 ECH
Aed4g2173 4 24556290 24558819 Aed3g1941 3 23615815 23618340 PCT