Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2170 ATGACTCGGAGAAAGACGAAACTGGTGTTAATAGCCAATGAGACTGAGAGGAGGACATCCTACAAGAAGAGGAAGAAGTCGATGCTGAAGAAGGCGGAGGAGCTCAGCACCCTTTGCGGCGTTGATGCGTGCGCTATAGTTTACGGCCCCTACAGTTCTCAGCCGGAGACTTGGCCACCAGAGAAAGAAGCCGTCGAAAGCGTGCTGAAGAGGTTCGAGAACGTGCCGGAGTGGGAGCAGGGAAAGAAGATGGTGAACCAGGAGAGCTTCATCACGGAGAACATCCAGAAGATAAGGGACAAGAAGAAGAAGATGGCCAAGGATAACAAGGAGAAGGAGATGACCTTGTTCATGTACCAGTGCCTCAACAGTGGGATCAACCTTGCTGATCCTCGTACTAACTTTAACCCCGCGGATTTGAGTGTTCTTACGTCTGTCATTGACCAGAACCTCAGGGAGGTTGGCAGAAAGATGGAAGAGATGAAGGTTAGCGAGCCGGCGCCGATGCCGATGCCAATGCCGACGCCACAGCAGCTGCAACCACAGATTGAAGCACCGGTGGTGATGGCACCACCGCCACCACCACCGCTGGAGCAAATGGCGCCACCGCCACCACCACTGCCACTGCCACCGCTGGAGCAAATGGTGGCACCGATGAATTACGGCCATGGTGGGTCGGATATGATGAATAATGACCCCTTGCAAAGCCAGTGGCTTATGGATTTGCTCAATGGTAATGGGGATGAGACACTGATGATGCCTCCTGCATTTGGAGAAGTTAATCTCCCTCTCTAA 795 0.5296 MTRRKTKLVLIANETERRTSYKKRKKSMLKKAEELSTLCGVDACAIVYGPYSSQPETWPPEKEAVESVLKRFENVPEWEQGKKMVNQESFITENIQKIRDKKKKMAKDNKEKEMTLFMYQCLNSGINLADPRTNFNPADLSVLTSVIDQNLREVGRKMEEMKVSEPAPMPMPMPTPQQLQPQIEAPVVMAPPPPPPLEQMAPPPPPLPLPPLEQMVAPMNYGHGGSDMMNNDPLQSQWLMDLLNGNGDETLMMPPAFGEVNLPL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2170 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Aed4g2170 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 204 - -
Aed4g2170 264 Coils Coil 95 115 - -
Aed4g2170 264 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Aed4g2170 264 CDD MADS_SRF_like 2 86 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aed4g2170 264 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed4g2170 264 Gene3D - 13 121 IPR036879 GO:0003677|GO:0046983
Aed4g2170 264 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed4g2170 264 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed4g2170 264 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Aed4g2170 264 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2170 Aed-Chr4 24495926 24496720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2170 3 251 Type I MADS-box Gene Family AT1G65300 33.992 2.71e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed4g2170 SRF-TF 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2170 - - gmx:100795996 271.552