Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2155 ATGGGTTCCGACATTTGCGTTGTGAATGGTTCGTGCACTCACGAATGGAGAAAGGGGTGGCCTTTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATATATGGAGGAGTGGAAGGGTGACATCCTTGACCCATTATCTGCGCCTGAGAATTCAGTTTTCTGTAATAAATTCCACCGCCAACAAACTGGTTGGAGGGAGTGTAACCTTTGCAACAAGCCTATCCACTGCGGATGCGTAGTATCTAGATCATTTTTCGAGTATCTTGACTTTGGTGGCATAGGTTGTGTCAGCTGTGTAAATACTGCCCAACTTAGTATGATGAGGAATACTGAAAATCCAAATGTGTCTGTTTCATTGATAAAAAATAATGCGAGTGATCAGCATTCTGCTCATTTTGATGGCAGACTGTTTGGGGGGGGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTATTGAAGCTAGTGAATCCAGCCATTGGAATCAAGCTCAAAGAGATGGCATAATTGCAAATCGTGTGCAAAACAACCAAGAAGCCAAGTGTTCATTCAGGGAAGGGGACATTGGATTTTCAAATGTGATGAAACCATCTGTTCAGTCATTAACATTTGGTACGTTAGAAAACAATAGGCCATCATGGGAGATTAAAAACATGCATGAATCAAATGCACAGCCATCTTTGAGTATGTATCTGGGAAATGCATCAGGGAACAACTCTGTCCCGCCTTCTGCTGGAGAGGCTGTAGAAGGAAGAGTTGAGGGAAAAACATCTCCTTCCTTTCATCAAGGGCAAAGATCTCGCCCTATACTTCCTAAACCGTTGAAGAGTGGGCTTACCATGAATGTGGAAACAGATAAAAGTACAATTTCTCAATCACGTGTTGCTCGGCCACCTGCAGACGGCAGGGGCAAGAATCAGTTACTTCCTCGATATTGGCCGAGGATTACTGATCAAGAACTGGAGCGATTGGCTGGAGATTTGAAATCCACTGTTGTGCCATTATTTGAAAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTTCTATTTCACAATCTGAAGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAGTGGACATTTCAATTCAGATTTTGGCCCAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACTCCTTGTATACAGACCATGGACTTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGAGGTAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCTCCGGATACACAGGTTGAGACACAAGTTCCAATTTACTGTGTGGCCTTTTCTTTGAATAATACATCTTTGTTATTATTAGTTATTATTATTTTTTTAATTATTATTATTATTATTATTATTATTATTATTTCTGTTGGTTAA 1467 0.4158 MGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGYMEEWKGDILDPLSAPENSVFCNKFHRQQTGWRECNLCNKPIHCGCVVSRSFFEYLDFGGIGCVSCVNTAQLSMMRNTENPNVSVSLIKNNASDQHSAHFDGRLFGGGVDEGKLMQFCKIIEASESSHWNQAQRDGIIANRVQNNQEAKCSFREGDIGFSNVMKPSVQSLTFGTLENNRPSWEIKNMHESNAQPSLSMYLGNASGNNSVPPSAGEAVEGRVEGKTSPSFHQGQRSRPILPKPLKSGLTMNVETDKSTISQSRVARPPADGRGKNQLLPRYWPRITDQELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQTMDLRAGDTVTFSRIDPGGKLVMGFRKASNSPDTQVETQVPIYCVAFSLNNTSLLLLVIIIFLIIIIIIIIIIISVG 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2155 488 SUPERFAMILY DNA-binding pseudobarrel domain 336 439 IPR015300 -
Aed4g2155 488 MobiDBLite consensus disorder prediction 284 298 - -
Aed4g2155 488 SMART B3_2 339 440 IPR003340 GO:0003677
Aed4g2155 488 CDD B3_DNA 337 438 IPR003340 GO:0003677
Aed4g2155 488 MobiDBLite consensus disorder prediction 258 311 - -
Aed4g2155 488 Gene3D - 317 444 IPR015300 -
Aed4g2155 488 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 446 - -
Aed4g2155 488 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Aed4g2155 488 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Aed4g2155 488 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2155 Aed-Chr4 24372664 24380183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2155 1 446 B3 DNA Binding Superfamily AT2G30470 47.672 2.53e-125 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed4g2155 B3 5.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2155 - - gmx:100789848 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2155 4 24372664 24380183 Aed4g2155 4 24372664 24380183 ECH
Aed4g2155 4 24372664 24380183 Aed3g1945 3 23644554 23648771 PCT