Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2148 ATGTCCGTACAACCACCCATGAAGCTCCACCACCCCTTTAACCCACAGACCTCAAGCTCAAATTTTGACGGCGACCCACCATCCAGAACCGCCGGAAAGTCCAAACCATCTCACAAGAAGCTCCTCCGGGTCATTCTCACCGACCACGACGCCACCGACTCTGACTCCTCCGGCGACGACTATGACCTGAAACCCAAAAAAGTGAAAAGACAAATCACCCACATAACCATAAACCTTCCCTTTCACTCAGAACCCCAAACACAGACACAAACACCGTCTTCATCTTCTTCTTTTGAACCAACCCCTTTAACTCTTCCCGTGAAACGACCCGCCGCCGCCCCTCGACGCCGGAGCAAGTTCCGCGGCGTCCGTCAGCGGCCGTGGGGGCGGTGGACCGCCGAGATCCGCGACCCGACACAGAGAAAACGTGTCTGGCTTGGCACCTTCGACACGGCGGAGGAAGCCGCCGCCGTGTACGACGAGGCCGCCGTGAAGCTCAAGGGCCCCAACGCCGTCACCAACTTCCCCCTCGCCGGAAAAACAGAACGCGAAACCGCGCCGCCGGAGACGGCGTTATCCGGCGAGGGTTTTTCTTCCCCAACGTCCGTCCTTACTTACTGGGACGTAGACTCGTCGCCGTTTGACGGTTTCCGTTACGGAGAGGTCGATGCGTTCGGGTTTGACATCGACGCGCCGTTTAGTTTGACGGACGTTAACTTGGGCGTGCTGAGTCAGCGGGTTGGGAAGGAGGAGTTCGGCGAGTTTGACCCGGACGAGTTCTTGACGTGGCCAAGTTAA 798 0.5815 MSVQPPMKLHHPFNPQTSSSNFDGDPPSRTAGKSKPSHKKLLRVILTDHDATDSDSSGDDYDLKPKKVKRQITHITINLPFHSEPQTQTQTPSSSSSFEPTPLTLPVKRPAAAPRRRSKFRGVRQRPWGRWTAEIRDPTQRKRVWLGTFDTAEEAAAVYDEAAVKLKGPNAVTNFPLAGKTERETAPPETALSGEGFSSPTSVLTYWDVDSSPFDGFRYGEVDAFGFDIDAPFSLTDVNLGVLSQRVGKEEFGEFDPDEFLTWPS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2148 265 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Aed4g2148 265 MobiDBLite consensus disorder prediction 76 102 - -
Aed4g2148 265 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Aed4g2148 265 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Aed4g2148 265 PIRSF PTI6 13 265 IPR017392 GO:0003700
Aed4g2148 265 MobiDBLite consensus disorder prediction 11 27 - -
Aed4g2148 265 MobiDBLite consensus disorder prediction 1 124 - -
Aed4g2148 265 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 261 - -
Aed4g2148 265 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
Aed4g2148 265 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Aed4g2148 265 Gene3D AP2/ERF domain 118 178 IPR036955 GO:0003700|GO:0006355
Aed4g2148 265 MobiDBLite consensus disorder prediction 41 69 - -
Aed4g2148 265 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Aed4g2148 265 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 31 261 - -
Aed4g2148 265 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2148 Aed-Chr4 24325044 24325841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2148 40 217 AP2-EREBP Transcription Factor Family AT4G27950 41.624 3.04e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed4g2148 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2148 K13434 - gmx:102660028 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2148 4 24325044 24325841 Aed4g2148 4 24325044 24325841 ECH
Aed4g2148 4 24325044 24325841 Aed3g1953 3 23718577 23719425 PCT